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16-1568-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11528099 [Map]; Strand: c
      • AT1G32049.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -346; Region: promoter
    Flanking Genome Sequence: 16-1568-1 - 5-prime edge 
    CCTGGACGCT TAATCTCCAC CATGCAAATG ACCTCTACTA AAAAGACATA 
    CATAACAGCA AAGAACCAAA CAAGCCATAG AGGGGCAACG ATGAGAGTGA 
    AGATGGGAGA AACAATGGAG ATGAGCATGA GAGCTGCAAG AGCCCCAAAG 
    AGATGGCTGA TGTGTCCAAC GAAGTGGTGG ATCGGAGCTT GGTTACTATT 
    GAGCTTTATT TCAGTGACTC GGAGGACGAC GTAGATCAGA ATAAAGACAC 
    AGAAAGAGAG GATAGTGGCT TTGACGATCT GCAGTATTGA TTGAAGCTGA 
    GGAATTACCA GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11528215 [Map]; Strand: c
      • AT1G32050.1 - [+] show detail - SCAMP family protein
        Distance: -230; Region: promoter
    Flanking Genome Sequence: 16-1568-1 - 3-prime edge 
    CGTCCAGGGG ACGCAAATCT TACGGACCAG ATCTCTCAAG TATAGTAGTT 
    TACACGTAGC TTGAGATTCC GAGCATCATG TTAATGTATT AGTAGTAATT 
    TATAGCATAA AATCATGTGT TTTTTCTTTC TAAGTTTTCG AACCCTAATC 
    GTGTATATAA TAAAAGAATG AGTCGGGCCT ACNTTTAAAG CCCGAAACAA 
    ATAACCAAAA CGGCCCATAT ACTTCTTAGG GTTAGTTTCG TCAAAATACC 
    AATAGTTCCA AATTCCGCGT TTCGTGTGGG AGAGAAAAAG AAGAAAAAGA 
    GAGTCCAACC ATATCAGTTT GCTTTCACAG TGGAGTCGGT GCTCTCTCTT 
    TTTTTCTTCT CTCTTTCTTT TCACCTCTCG CCGGATCTCG GCGATCTTAT 
    AGGAGACAAA TCTATCAGTA TCGTTATTCT AGGATCTCTG ACCAACAATG 
    AATCGCCACC ACGATCCCAA TCCTTTCGAT GAGGACGAAG AAATCGTCAA 
    TCCTTTTTCG GTAACGCTTT CTCTTTCTTC TTCTTCTTCT TCTTCTTCTC 
    CCTGAATCTT CGATTTTTGT TTTTTTTCCT CTATTTTTTT TTATTGCCTG 
    TGTNCGCGAC GGTAGNGGAA TCTAAATCTC TCACTTGNNG AGTTTTTATT 
    TAGTTTTGNG CNAATGGAAA ATANCAAAAN CTGAGGACTG ANAACTGNGT 
    AATGTCTTTT TGATTACGGA AGGTTNNTTT TTTTTTGAAA ATGA

AT1G32049.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT1G32050.1

Model type
Protein coding
Short Description
SCAMP family protein
Computational Description
SCAMP family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 679 Blast hits to 677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 14; Plants - 225; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR