1. Home
  2. Mutant Lines
  3. 16-1596-1

16-1596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
seedling (PO:0008037)
  • variegated (PATO:0000335)
    (Seedling::variegated leaves)

sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)

vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13782951 [Map]; Strand: c
      • AT4G27600.1 - [+] show detail - pfkB-like carbohydrate kinase family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 16-1596-1 - 3-prime edge
    CTTTCAAGTC ANAGACACCC CTCANGATAC CGTATNNNAT CCCTGAAGCA 
    TATGCATNTC CANCACNACA TGTATCAACT GGCACGCATG GGGACCGGAG
    GAATGTATGA TGGCCTCTCC TTTTACTCCA ATATATGACC CGTTGATTCC
    ATCGGTAACA NAAACAAACG GAACAAAGTG GCTCATGTAT CTTGTCGCTG
    AAATTGGACT TTCCTCTGCG GAAAAGTGAC AAAACGCTCT TGCTTCATCG
    CTATTTGCAA ATACAATATC CGCATAGTTC CCCACAATGT CCCTGAATCA
    ACAGAAAACC ATCAGCATTT ATCTAGGTTC AAGTTTCGTT TTTTCGAGAG
    ACATTCACAG CTTGAAGCAT CAAAGCT

AT4G27600.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Curator Summary
Encodes a phosphofructokinase B-type carbohydrate kinase family protein, NARA5. Regulates photosynthetic gene expression.
Computational Description
GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5 (NARA5); CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G19600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR