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16-1596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)
seedling (PO:0008037)
  • variegated (PATO:0000335)
    (Seedling::variegated leaves)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13782951 [Map]; Strand: c
      • AT4G27600.1 - [+] show detail - pfkB-like carbohydrate kinase family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 16-1596-1 - 3-prime edge 
    CTTTCAAGTC ANAGACACCC CTCANGATAC CGTATNNNAT CCCTGAAGCA 
    TATGCATNTC CANCACNACA TGTATCAACT GGCACGCATG GGGACCGGAG 
    GAATGTATGA TGGCCTCTCC TTTTACTCCA ATATATGACC CGTTGATTCC 
    ATCGGTAACA NAAACAAACG GAACAAAGTG GCTCATGTAT CTTGTCGCTG 
    AAATTGGACT TTCCTCTGCG GAAAAGTGAC AAAACGCTCT TGCTTCATCG 
    CTATTTGCAA ATACAATATC CGCATAGTTC CCCACAATGT CCCTGAATCA 
    ACAGAAAACC ATCAGCATTT ATCTAGGTTC AAGTTTCGTT TTTTCGAGAG 
    ACATTCACAG CTTGAAGCAT CAAAGCT

AT4G27600.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Curator Summary
Encodes a phosphofructokinase B-type carbohydrate kinase family protein, NARA5. Regulates photosynthetic gene expression.
Computational Description
GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5 (NARA5); CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G19600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR