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16-1653-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9568650 [Map]; Strand: w
      • AT1G27540.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -744; Region: promoter
      • AT1G27540.2 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -762; Region: promoter
    Flanking Genome Sequence: 16-1653-1 - 5-prime edge 
    CTTGTAACTC GTCTATCCCA CTTCCGCTTC CCTTAAGTAC TAAATGAGAT 
    TCTCCTTACT TCTCTAGAGA TCTCTATTTA TGCAAAAACA TATATTAAAC 
    ATACCATCCC CATAACCCAA ACAGAAAACA ATTTCTTAAA TACTTCTAAT 
    AATTTAAAAA TTGAATATAA ATTTTATACA ACACACATTT TAAAATATGA 
    AATACGTACG TGCCGCTCAG GTTCTAGTTA TCTTTTATAT GATTAGTATT 
    CCGTTCATTT CAAAATGCCA CACAACAACG TAGTCTTCCT TCTTGTCGCC 
    TACCCACAAA CGGCCTCTCA GATCCTCGGC AGTATGAGGA GCCCCACGCG 
    ATAAATCGCT GATTAATATA TATCCCTGAC TTTATCCTCT CCTACTCGCT 
    CAATCTTTAA AAGGCTACCT TTCAATGATT CTAGTGGTGG AAGATCGATC 
    CTCTCCTCGC TAAAGACATC TATAATATAG AGTTTCATTC GAGAATCTAC 
    CACCAGAAAC TACTTACCTG AGCTTCCAAG GAATCGATAC CTCATACCTC 
    CAAAGTCGAA AGGTCACTAT TCGTCTCGTA AACCCTATCA TCGTTTGGGT 
    TGGACACACT ACTGCGATAA CCATCCTTTT CTGCATACAT CATCAGCAAT 
    GGAGATCCGG CTTCTTGTCG CTGAATCAAA GTCGAACGCA TGGCCTTTGC 
    AGACTCANGA TTCTGACAAC TCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9568534 [Map]; Strand: w
      • AT1G27540.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -628; Region: promoter
      • AT1G27540.2 - [+] show detail - Protein of unknown function (DUF295)
        Distance: -646; Region: promoter
    Flanking Genome Sequence: 16-1653-1 - 3-prime edge 
    GTTACAAGGA ATGATCCCGG TGAAGCGAGG AATACAAAAT ACAAATCATA 
    TAAGTGATAA TTATTCAGTT CAATTTTTTT CCAATCATTT GTCTACTCAT 
    ACACATAATC ATACAATCAT AATCATAGCC ATTTTTTGTT TTACNTTTTG 
    GAAAACATAC ACAACCATTA CGCAAATGAA AATCTGATTA AATGCAATTT 
    TTAAACTAAA TACCCTTCAC GAAATCACAT GATAGAAAGT TGATAGTTTA 
    TGTGCTAAAA GGTTTTTAGT TTTTGAGAGA AACACAAGTT ACTAATTTAA 
    AAAATAAATC TAGCTAAACA AAAAAGTTTC AGATTTTTTT ATATAAAAAA 
    GTCATAGGAT TTTATATCGT GTAATCAAAC CAAACCAATT GAGGAAAAAA 
    AGAGAATATG TTAATAAATA TCAAGAAAAT ATAATTAAGT ATCATATTGT 
    TTTATATTTT AAAATTATTT AAACTAAAAT AAATTGATAT ACAGTCCAAC 
    CAAACAAAAT TTTAACCAAA ATATTAATCA AAAATGAAAA TTTTGTAACG 
    AAACGATCCG TGATGGACGT CGTATATTGG GCCATANACC CGTTAAAATA 
    TAATTTCTTG CTGTTACTGG GCCTGGTGGT TCCTAACTAT AATGTCTTCC 
    ATTTCAATAT GCGCAACTTA ACGCCTTCTC AATCTTATCG AAAGACGACN 
    TTNAAAGAAA AAGGAANAAA NCCGGNCGNG ATNTTGGAGA GATCT

AT1G27540.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27540.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 278 Blast hits to 271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR