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16-1666-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21427474 [Map]; Strand: c
      • AT1G57850.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
        Distance: 125; Region: intergenic
      • AT1G57860.1 - [+] show detail - Translation protein SH3-like family protein
        Distance: 2424; Region: intergenic
    Flanking Genome Sequence: 16-1666-1 - 5-prime edge 
    TTNTGAATTT AAGAAAGCAT ATGCTGATAA ATGAACCAAC TTATCTACAT 
    TCATTTGTTT TAGTAAATAT AACCGTAAAA TGACAAAAAA AAACANGATC 
    AGTATTNGNA GTCGTCGCTA TGTTATCACC TNGATTAAAA CTACATGTAC 
    AAATTGCATG TTATTTGACC AANGGAAGGA AAAAAAACNT AAAAGCNGAA 
    NCNCTAGTNG TACCTTTNGN CNNCCAAGGA CAGGCCNNTN TNGTNGGAAA 
    TCCNCTNTAG CTGCTTNCTT CCACTCCATG ATCTGATCNC CNCGANAAGT 
    TCTTGCAGGC GCCCAAAACG TTTCACCAAC CTCACCGGGC NGTCCTGTNA 
    CATNNCTTGC CCTAACCTTG NNCAAGANGG GANNGACTNG GAGCNTTCCT 
    TAATCCGCAC GTTAATTNAT NTTCANACAG CTNATCCANG CACCAACTCA 
    AATCCGNANA CCTANCNGGA TNTNGAACCN CCCTGNCANN NCANAAACTG 
    CAAGAAAATC AAANCATGGN CCCNCCACCG AACANTNAAA CCATGCATCT 
    ATATNAAANA TTTCTNCCCT TCCTTNATTG AAANNGAATG AGANTNAAGA 
    CNAGANGNCA NTTANGGGTN NTTCNCCCTT CGAAATCCTC NNGNACTNNA 
    NCGGNGGNCT TCCAGGGANN ATNCNNNTGN CANNNNNCNN CTCTTTNNAT 
    CCCNNGCAAT AAGGTNANGT CNGGGNTGAA TACCCNTANA CNTTTNCTGN 
    NGGANAAAA

AT1G57850.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain family protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT2G03300.1); Has 1603 Blast hits to 1538 proteins in 50 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 1595; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G57860.1

Model type
Protein coding
Short Description
Translation protein SH3-like family protein
Computational Description
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Link
InterPro Scan - TAIR