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16-1691-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541903 [Map]; Strand: w
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: -430; Region: promoter
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: -430; Region: promoter
    Flanking Genome Sequence: 16-1691-1 - 3-prime edge 
    GGTTGACTNN TGNNNGGGCT AGTCCNATTC NGANNNATCA CCGATTACTT 
    GNTNCTGNCA TNTATAGCGA TNGTGGATNN CCANNCTAGG GCCTGCNNAC 
    GAAANCTGTG CACCNNGNNG CCNATTTANA GATCAGGAGT NCTGGTAANA 
    NGATCACTGA TATANGCTTA GATTCACANN CNNGTNATAC NTNCANNACN 
    AGANNNNGNN NGTATNCCTT TNTNGNACTA NTCATTTAAT TTTGTAAAGA 
    CNNCATTTTA TAAAAGAGAA AATTGTAATT GGTCAACAAA TGAACGAAGA 
    TAGTAATCAA TGTCCGTCCG GTTTTGAAGA ATCGTTTACT TTTCAAATCT 
    GAAAAACGCC TAAAAGAGAG AGAGAAACAA AGTAAATATA GGGGCATCAT 
    CGTAATAAAA GAAGAAGAAC GAGGCTAAAA CAGTAACGCA CCTTCGTCTA 
    CTTAAATACA AGCGAAAACC CAAATCGGTT TTCACTCCCC GTCCTACAGG 
    TCGACTCAGT CTCCGGCTAG TTCGACTCGG TAAAATCACG ATTACTTTCT 
    CCTTCCATTT ATCACGATCG TGGATC

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR