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16-1727-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29763529 [Map]; Strand: w
      • AT1G79110.1 - [+] show detail - zinc ion binding
        Distance: 2838; Region: intergenic
      • AT1G79120.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase family protein
        Distance: 560; Region: intergenic
    Flanking Genome Sequence: 16-1727-1 - 5-prime edge 
    TTTGAGAGTG CAACAACCAC TAAACAAAAC GATTTTATTC CCATATACAC 
    GTAAGTGGCA TAAACACGAT ATGATGTAAA AGATAATAGA TTACATGAAA 
    ATGTCTTTGG GAATAATTAA AAGTAGAGAT ATAGATGTGA GGAGGGGTCA 
    TGATGGGGAA CACCAAAACT TTATAGATTA CCTTGTGAAA GGGGGCACTC 
    ATGAAATGGT CCAAACTCAC TACCCTATTG ATTTTGGTAG CTTTTGCCTT 
    TTTTGTTCTA TTTCCTAAGA AAATTATTAA TTTAATTAAC TAGTGTATCT 
    TATTGTTGGG AAATGGGGGC CCGCTTATCA TTTTTCACCC TTAAGCCATC 
    AATTCGATTT GACTACATTA CTATGAATAA ATGAGCCCAA ATGGGAACAA 
    AAACATTTGT CACCTCTTTT AACCTTTAAC ACTCTTGTCA ATAATGTGAA 
    TCGGAATCAC AATCCCACCA AAAAAAAATN TAGGANTTAC CANCCCGGGC 
    CGTNNACCAC NCGTGCCCCT NNA

AT1G79110.1

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79120.1

Model type
Protein coding
Short Description
Ubiquitin carboxyl-terminal hydrolase family protein
Computational Description
Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G21970.1); Has 409 Blast hits to 404 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 409; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR