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16-1735-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3884427 [Map]; Strand: w
      • AT5G12030.1 - [+] show detail - heat shock protein 17.6A
        Distance: 0; Region: exon1 (CDS)
      • AT5G12040.1 - [+] show detail - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
        Distance: -641; Region: promoter
      • AT5G12040.2 - [+] show detail - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
        Distance: -727; Region: promoter
    Flanking Genome Sequence: 16-1735-1 - 3-prime edge 
    GCATNCATTC TNGTTCANAT AGANAACTAG ACGTGCTTGT GGTGAGTGGC 
    AAAAGACAGA GGGACAACAA GGAGAATGAA GGTGTGAAGT TTGTGAGGAT 
    GGAGAGGAGG ATGGGGAAGT TTATGAGGAA GTTTCAGTTA CCTGATAATG 
    CANATTTGGA GAAGATC

AT5G12030.1

Model type
Protein coding
Short Description
heat shock protein 17.6A
Curator Summary
Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.
Computational Description
heat shock protein 17.6A (HSP17.6A); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class II heat shock protein (TAIR:AT5G12020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12040.1

Model type
Protein coding
Short Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Computational Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, zinc ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (TAIR:AT4G08790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12040.2

Model type
Protein coding
Short Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Computational Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, zinc ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (TAIR:AT4G08790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR