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16-1740-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945394 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1740-1 - 5-prime edge 
    GGNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTGTGGAGA GAGACCACAG CCGTTGGATG 
    CGCACGTGTG AAATGCCATA ACGGTCGTGG CTATCTTGTG GTGTGTGAAT 
    ATGATCCACG CGGGAATTAC GAAGGTGAAA GACCATTTTG ATCAAAACAG 
    TTAAAATGAA AAAATTGTTA GAGATTCAAA ATATTTTATC TTCTTCTAAA 
    GTAATGAAGA TGGTATATTA TTCTTGGTCC TTACATATAT ACAGCCATGT 
    ATTGAAGAGG TATAAATTCA AATGGTTCGG AATCTTTTAA TTTTACTATA 
    TTAAAGATCA ATAATAAAAA AAAACGTCGA CAGCAGGGTT CGAACCTGCG 
    CGGGCGAAGC CCAATANATT TCAAGTCTAT CTCCTTAACC ACTCGGACAT 
    ATCGACTTGT TGTATTTGTT TCGTAANATT TGAATACAAA ACCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945385 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1740-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    CGTGTAATGG CCGCACATCT TTCCCGGTGC GCACGTGTTT GTTTTCACGT 
    CGTAGTTAAA CCTTTCCTCA AACCATCTCG TCACCACTTT CTCCGGCGAC 
    CACGTCTTCT TACGCCGGTG CCAGAAAATG TTCTCACCGT AAGGCCCACC 
    TGAATGTATC ATACTGCAAT CGGACTTACG TTGTTTAGCC CATTTATCAG 
    CGAATCGGGC CAGGTCTCTG TCCCATCCGA GCGTTGGCAC GCCTGAAGAA 
    ACACGTGCAT CGTTGTGCGC TTGTAGAAAT TCTCTCGACA GTTTTGCTCT 
    TCTCGCTCTG TTTACCAAAC GCGCCGCCGT GTTCACCGCG TCGGGGATGG 
    AGGTTCCGAG GACGGAGGGA TGACCGGAAA AGAGAAGGAA GAGAAGAAGA 
    AGACATGATG ATGGATGAGA CAACGTTACA GACATCTCCA CGTCTCTGTA 
    TAATTTTGTC TCTCATCATG ATTCCTCTGT TTCTAAGGGA GTTTTTTTTG 
    TTACTTTTGT TCAGTTAGAG ATTTTTCCAT TTTCTGACAT TTTAACAAAT 
    TTTCCTGATT CTGTTGTTTC ATATCAAACA ATTCTTATTG GTGATGATGA 
    GAAAACTACC GTATATTTTT AGATTAAAAA AACGAAATTA TTAAGGTTGT 
    TATACTTTTC ACAACCCACC AAAAGATAAA AAGAAAAACA NTTCCGTCAA 
    CAGCAGGATT CGAACCTGCG CGGGCAAAGC CCAATTGATT CNAGTCAAT

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR