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16-1753-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 456331 [Map]; Strand: c
      • AT2G01973.1 - [+] show detail
        Distance: -243; Region: promoter
      • AT2G01980.1 - [+] show detail - sodium proton exchanger, putative (NHX7) (SOS1)
        Distance: -679; Region: promoter
    Flanking Genome Sequence: 16-1753-1 - 5-prime edge 
    TGTGAGTGTG TTTACTTCGT GGAGTTTGAT GTGTTTAAGG TTTCGAAAAT 
    ATTTGACAAT TTGGATTAGC CTGACTCTAT TCGGCTGATC CAAAACATTA 
    ATCTGATACC TTCAATTCTT CACCTTTTAA TTTATAATAT TCTTTAAACT 
    TTCAATTATG TTTAGCTATG CACAACAATA TTTTCAATTT CGCATATCAA 
    AATAACACCA ATTATTGTTT TCATGCTATT CAGAAGCACC CACAAAATAT 
    CAAGACTTTC ATAGATCTTC TAGTGTGCAT GTTAAAGGAC TGTTTAGGTT 
    AGTATTGATT AATCGACCAA CCGTCGATCC TAATGAAATG CTCAAAGATA 
    GAATCCAACA TAAAGAATCT CTATTGGTAT TCAAGATTTG CTTATAGAGT 
    AGTGATTGTT AGTTAGTTAA TTTGTTATTC TTTGATTTTC TAATCAGCTT 
    ACGAATATTC TTCAAGAGTA GAGATGCTAA CAACATGCAT AATAATTTGT 
    CTAATGGTAA TTCTACAATA GGAAAAGAGT TTACGCTGAT TACTCTATCA 
    TTAGTAGTTC AGGGGATAGT AGATGTTTGT TTCGTTCTAC GGCTTATGCT 
    TATGCTCTGG AAAACTGGTT ACAGGCGAGA AGATTCAGAG AGAACTCATT 
    GATAGATTAT ATATCATGGT CGCTGATGAG TGTATGATTC GTCACCACCA 
    TCAAAGAAAG GGCAAAATCA ATAGGTATCA GAGTTGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 456447 [Map]; Strand: c
      • AT2G01973.1 - [+] show detail
        Distance: -359; Region: promoter
      • AT2G01980.1 - [+] show detail - sodium proton exchanger, putative (NHX7) (SOS1)
        Distance: -563; Region: promoter
    Flanking Genome Sequence: 16-1753-1 - 3-prime edge 
    CACTCACACA CATATCAAAA TTCACATTCT CAATGTATTT CTGGTNGGCT 
    NGTCGTCTAA TTCTAAAATA GCCAATTNAC ATTTGCAATT GTATTATTCA 
    ACAAAAATAC AACAGTAAGA GGTCTTATCA ATTAAATCAT AAGAAAAATA 
    TGTCCCAAAA TGTCAAAAAA CCAACTACGA ATNTTTCTTT TCCTTTTAAG 
    GCCAACCCAG GTTTTGGAAT ACTTATTACA AATAAACTCA ATTTCAATAA 
    ATTCTTGTAC ACAAATNAAG CACTAATTTC ATTGTGAAGA TACCATAGTC 
    ACATTCACAT CTATATGACA TCAATCTATA AAATCCAAAA CAAACTATAT 
    ATTATATTTA TATTATTTTT TTGTCATCAT TATATTTCCA TTAATTAATC 
    TAATTCTGGT TCTAATATAC TCTTGGTCAG AAAAAATATA AACATTGAAG 
    AATNGGTCGG CTGAAAATTG TGAAAAATAT ATNGCAGAAA AATATGATAA 
    GTGTTATCAT AAACAAAATT AAATGTNAAN TTNAATTTNA ATTTAACACT 
    ACAGTACTAT ACACGTGTGT ATGTATAGCT CTNTAAGTAT TTACTCTCTT 
    TCAGCTATTT ATTTNTTTCA GNGGAACGAG CATTCTTCTT CTTCCTNTGG 
    GGGGTGGCNT TCTTNGATTT NTCCAATGAA ATGACGACNN TTATTCGACN 
    CCGACGATGG CGTANTNGAT TTTTGGAGGA AGCGANCNAN AGTTAANNTT 
    TAAANTAAAA AA

AT2G01973.1

Model type
Pseudogene
Curator Summary
pseudogene of OTU-like cysteine protease family protein
Link
InterPro Scan - TAIR

AT2G01980.1

Model type
Protein coding
Short Description
sodium proton exchanger, putative (NHX7) (SOS1)
Curator Summary
Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.
Computational Description
SALT OVERLY SENSITIVE 1 (SOS1); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 8 (TAIR:AT1G14660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR