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16-1786-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18745746 [Map]; Strand: c
      • AT5G46240.1 - [+] show detail - potassium channel in Arabidopsis thaliana 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 16-1786-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ACAATACTCT TCTTAGGGTT TAATTAAGGA 
    AGTGCTTACT CAAGTCTAAC TAACTCTTTC CTTTGCTTCA GGCTTGAGAA 
    AGATATCCGT TTCAACTATT TCTGGATACA GTTGCACAAA ACTCATTTCG 
    GTTAGTTCCA AAACAGAGCA AAACTAATCT CACTTATAAT AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18745753 [Map]; Strand: c
      • AT5G46240.1 - [+] show detail - potassium channel in Arabidopsis thaliana 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 16-1786-1 - 3-prime edge 
    ATTGAAACGG TAGAGGTATT TTACCGACCG TTCCGACCGT TTTCATCCTC 
    TTAGTAAGCA ATGAAACCAA CCTTGCAAAC AGCGAGCTAA CTCGCCGGAG 
    ACGCCATAAT CTGAGCATGC TAAGAATT

AT5G46240.1

Model type
Protein coding
Short Description
potassium channel in Arabidopsis thaliana 1
Curator Summary
Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5
Computational Description
potassium channel in Arabidopsis thaliana 1 (KAT1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: potassium channel in Arabidopsis thaliana 2 (TAIR:AT4G18290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR