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16-1869-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238109 [Map]; Strand: w
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -338; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -393; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -381; Region: promoter
    Flanking Genome Sequence: 16-1869-1 - 5-prime edge 
    CGNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TACAATGAGC TCGATGAATT AGACTTAATG 
    CACTGGAGAA GCTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238107 [Map]; Strand: w
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -336; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -391; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -379; Region: promoter
    Flanking Genome Sequence: 16-1869-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGGTATACG AAGGATTTGA CTGAGCTAAC TTAGGAAAAA AAGATTGAAA 
    CGAGGAATGA TTTAGTAATG GTAATTTGAC CTTGGTTTTG TACTTCTTTT 
    AATTCATAAA CCCCCTCCAG CGTAAAAATG AAACATTAGA AATCCTAAAA 
    GGGCAGAACA AGTTGATGTC CAAAAAAAAA GAAAAAAGGG CAGAANAGTA 
    AAACGCGAAT GAAAGAGTCA AAGCAAAAAA TTGGTAAAAA AAAGCGTGAA 
    CGGCAGGATT CNAACCTGCN CGGGCAAAGC CCACATGATT TCTAGTCATG 
    CCCGATAACC ACTCCGGCNC GTCCACCTTT GCTAGTTGAA TCATTTGTTA 
    AATTGAAAAC CCGTCATTTT GATCTGATTT TGTACTGTAT GTTGACAAAT 
    TGAATAGTCT CTGATGATTT CNATCAAANA NAANCCACGG GGGGAGCGGT 
    ANCNCTTAAA GGTTCCTCGC TTTCTTCTNA AGTTTATAGT CTTCTCCTCT 
    GNGTNGGCTC ATTTACATGG GTANATTTAG TTTTCNAGGG TTTTATGGCG 
    AAGTTCGCNA TGTTCTGTTA ATTGCAANGN CTTTCTTCTT TTTTTTTTTT 
    TTTTTTTTGG GGNNNNNNNC CCNNNNNNNC NNGGGGNNT

AT1G80420.1

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.2

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.3

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.4

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357).
Link
InterPro Scan - TAIR