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16-1892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25214618 [Map]; Strand: w
      • AT1G67328.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1892-1 - 5-prime edge 
    CTCAGGGCCC ACCATGTTCA GTACCGGACC CACCTTTNTG AGGCCGGCCG 
    CCTTCTCTCG ACTTACAAGA ACGAACCCAT GNGTTTACCA GCTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25214502 [Map]; Strand: w
      • AT1G67328.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1892-1 - 3-prime edge 
    GCCCTGAGGG ATGGAGCGTC CTTGAGGACG GCCTCTATCC ACTCAGGATC

AT1G67328.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G67330
Link
InterPro Scan - TAIR

AT1G67330.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Computational Description
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR