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Mutant Lines
16-1908-1

16-1908-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 30314235 [Map]; Strand: w
  - AT1G80640.1 - [+] show detail - Protein kinase superfamily protein
    Distance: 0; Region: exon10 (CDS)
  - AT1G80640.2 - [+] show detail - Protein kinase superfamily protein
    Distance: 0; Region: exon10 (3UTR)
  - AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
    Distance: -301; Region: promoter
Flanking Genome Sequence: 16-1908-1 - 5-prime edge
```
CTTATAACCG ATGTCTTGCA CTCACTCATC CCTCTTCTAC CAGTAGAACT 
CGGTGGATCA TTGCGGATTT TATAAAAAAA TATTTCCCCC TTTTTTTTTT 
TTTTTNNGAA AAAAAAAANG GGGTNAAAAA ANNGGCCTTT NNGGGGGGNT 
NNCNGGNNAA AAAAAGGGGG GGGGGGNAAA NCCCCCCNNA AAAAAATNNN 
AANNTTTNNT TNAANGGGNC CCNNNAAAAA AGTNATAANA NNGGGGGNGN 
AAAAANNAAA GGGGNAAAAN NNCAAAANCG GGGGGGGGGA NANCCCCGGG 
CCCNTTNNGN GGGGNNNTNN NGGGGGGGNN A
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30314162 [Map]; Strand: w
  - AT1G80640.1 - [+] show detail - Protein kinase superfamily protein
    Distance: 0; Region: exon10 (CDS)
  - AT1G80640.2 - [+] show detail - Protein kinase superfamily protein
    Distance: 0; Region: exon10 (3UTR)
  - AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
    Distance: -374; Region: promoter
Flanking Genome Sequence: 16-1908-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
GTGGTCTGTA ACTTGGCTCC GGCTGTACAC ACAACACCGC CACCGCAGCT 
ACCTGTCCAA AGAAAATATA ACACAAAGTT CAAAGAGGAA TCTTTTTCCT 
TCTATATTTG GCCTAATGTG TTTTTCGTAA AATCTGTGTG AGATTTTGTT 
GAAGCT
```

AT1G80640.1

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G25220.1); Has 94022 Blast hits to 93095 proteins in 3443 species: Archae - 76; Bacteria - 9181; Metazoa - 34848; Fungi - 7011; Plants - 29890; Viruses - 292; Other Eukaryotes - 12724 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80640.2

Model type: Protein coding
Short Description: Protein kinase superfamily protein
Computational Description: Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G25220.1); Has 92797 Blast hits to 92000 proteins in 3437 species: Archae - 74; Bacteria - 8919; Metazoa - 34761; Fungi - 6689; Plants - 29366; Viruses - 292; Other Eukaryotes - 12696 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80650.1

Model type: Protein coding
Short Description: RNAse THREE-like protein 1
Computational Description: RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1); Has 100 Blast hits to 100 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR