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16-1909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Fruits (Siliques)::others)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 446547 [Map]; Strand: c
      • AT4G01023.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G01026.1 - [+] show detail - PYR1-like 7
        Distance: -505; Region: promoter
    Flanking Genome Sequence: 16-1909-1 - 3-prime edge 
    ATCGACAATG GCGGATGACG CCAAGGGCGT AGCGCAAAAG GTTGTAAAAA 
    TGGTGGAGGA GATTGAAACA ATGGTGGAAA AAGTGGCGGC TATGGCCACA 
    AAGGCGGGAG AAACGGCGAC AATGGCGGCA GATATGGTGA AAGAAGCNTG 
    AGGAGACGAT GGAAACAGCT AAAGCTAATA TGTCCAAAGC CTTTGTGGTA 
    ATGAAGTCGG TGAATTGGAA CGTGTAAATC GGGTCAAAAC AGAGTTTTAT 
    TGTGATCTCA TGCTGACATC AGCTACAATC TTTATCTAAT AAGATAGATT 
    CTCACAAGAT TCTTTTATCT ATCTACTTTT TAGAGAAGAT GAGATCATAC 
    TTCGGAGATA GATAGGTGTC GTAAAAATTG GGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 446654 [Map]; Strand: c
      • AT4G01023.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G01026.1 - [+] show detail - PYR1-like 7
        Distance: -398; Region: promoter
    Flanking Genome Sequence: 16-1909-1 - 5-prime edge 
    GTGGNAANGC CTANCCTAAC ATTGNTGNCA CTTCCTTGAC CATGGNTANN 
    AAGAGACATC ACCGAGCGAG TTTTGTAAGA GTAGGTTTTN GGTGTGCTGG 
    AGACCTGTGT TTTTGGTAAA CAGTCGCCCC GGGCCTGGTC ACCTGCGACC 
    CCCTTTATTA CGAGCTATAC TTGGCATTCA GGTATCGACC TGAGCCCTTA 
    TAAAAAGAAA ACAGATTCTT GAACCCCTTT CACGCTCATG TCACGCCGAG 
    GTACTGCAGA AGAAGTTCCA TAGCTTTGAG TCCGCTATCG CTATCCCGAG 
    CATGATTTTC CTACCCCCCA AAACANANAG TTTTGCGTTT TTAACAAACC 
    TCTGGCTTTC TCACGTTCTT CCTCTATTCT TTCCTTGATC TCCACGGCTG 
    NGTCGAAAAG CCCTANAGTT GGCTCGTTAC ACACAAAACA AGTATCGTTC 
    TCANAGTGAT GNTGCATTAT GAAAAAAAAT AACAAGGAAA ATCTGNTTTG 
    AGNGNGNTTT CAGAAATNAC AAAAATTGTT GTAAGGAAAA NATNACCTTT 
    ANAGCNCANT TGNNGCNAAA AANAATGGGN NGCAGNTGGG TGAAACANGA 
    NAAAANNCCG GGCCNNNGAA ANACNNNNCT NGGGNNNNNN NGNGGNNGNN 
    NNCNANNNTN GACANNNNNG NGGGGNGNGG ANNNGNNNNN GNNNAAAANN 
    NNANAAGNNT

AT4G01023.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 1605 Blast hits to 1547 proteins in 476 species: Archae - 6; Bacteria - 22; Metazoa - 955; Fungi - 207; Plants - 131; Viruses - 8; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01026.1

Model type
Protein coding
Short Description
PYR1-like 7
Curator Summary
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of ABI1 and ABI2.
Computational Description
PYR1-like 7 (PYL7); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: regulatory component of ABA receptor 1 (TAIR:AT1G01360.1); Has 397 Blast hits to 397 proteins in 30 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR