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16-1911-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1953240 [Map]; Strand: c
      • AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -3451; Region: intergenic
      • AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 1750; Region: intergenic
    Flanking Genome Sequence: 16-1911-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGG 
    AATACACATA ANTATTGACT CATAAAGATT GTAGAATCAT TGGGTGGGGG 
    AAACAACAAA AGAGAAAGTA GAGAGACTGA TATAAAAGAT GTGTCTAGGA 
    GAGATGTATA TAACCTTTAT TCTTTTTGTT TCTTTTCTTT CATATAGTGA 
    AGCCNGCATT AAGAGTTTTA TTTGTCACCC ATCTTCATCA GAGGATACCT 
    TAGAAAGATT AAAAGAAAGT CCAAGGAAAC AGTCAACAAC ACATATATTC 
    TAAAATGTTA TTCCTTATCC AGACAGCACC AAAGAGGATA TAGATACCTC 
    AACATCTTCA AATCGGGGCT TCNACGTGTT GAGTTNTCTC NTTCTCAATT 
    CCAAGTCACA CCTGAAAGCA TCAGTCGATT TACTACCTCA AGATTATGCT 
    TTGATGCCTT CTTATCGNTC AGAAACATAA GGAAAGATCA TCAAGCCAAT 
    GTCCACATGC TCTACTAACG CAACAGAAAC AAGAATAATT CCATAGACCT 
    GTTTATATCA AAGGAAGAGT ACTCTCACTC GCAAGAAACT GTCTCGAGCG 
    ACTCTTGACG GGCTTATTGA GAAGATAAAA CCCATTTATG GTATTGAACG 
    AAACTATTGT TTCTTGGGCA AGTCACAAAA GCT

AT3G06410.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06420.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR