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16-1944-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21233930 [Map]; Strand: c
      • AT3G57390.1 - [+] show detail - AGAMOUS-like 18
        Distance: 0; Region: exon1 (CDS)
      • AT3G57390.2 - [+] show detail - AGAMOUS-like 18
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-1944-1 - 3-prime edge 
    GCCCAGGTTG ATTGATTTTG TTATTCAGAG ATATGGGGAG AGGAAGGATT 
    GAGATTAAGA AGATTGAGAA TATCAACAGT CGTCAAGTCA CTTTCTCTAA 
    GAGACGAAAC GGTTTGATCA AGAAGGCTAA AGAGCNTTTC GATTCTCTGT 
    GACGCCGAGG TTGCTCTTAT CATCTTCTCC AGCACCGGCA AGATTTACGA 
    TTTCTCCAGC GTCTGGTATA TTAATTATCA TCTCATGATT TTGCTTCTTT 
    TTTTTGCTTT GGGGAAATAA AAAGTTTTGC TTTTTTATGG GTTTTTGTGT 
    CTAAAGTAAA TGAAAACAGA GCAACCCCTG TTTATCTATA TCCTAATCTG 
    GCTAAATCTT TAGGTTGATG ATGAAATACT TTTGATGGGT TATGATTTTA 
    AGGTTTGGAG AATTGANATT ACNATTTTTG CAATCGGATT AGTTTGTGTG 
    TTTTATAAAC CCTAACTGTT GATGAAACTA CAATTTGGTC ACTATCTTTG 
    GTATCANAAT TTGGGANATG CATTTGTCTA TGTATATATC AGTTGTTANA 
    ATCTCAACTC CAGANTT

AT3G57390.1

Model type
Protein coding
Short Description
AGAMOUS-like 18
Curator Summary
encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.
Computational Description
AGAMOUS-like 18 (AGL18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 15 (TAIR:AT5G13790.1); Has 6796 Blast hits to 6793 proteins in 870 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 312; Plants - 5770; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57390.2

Model type
Protein coding
Short Description
AGAMOUS-like 18
Curator Summary
encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.
Computational Description
AGAMOUS-like 18 (AGL18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 15 (TAIR:AT5G13790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR