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16-1948-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18065301 [Map]; Strand: w
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 16-1948-1 - 5-prime edge 
    GTGAATCACA AGTCTNTGTG TTCCAGGTTT AGTTCAGTNT GCAATAAGAA 
    TCTGGTTTTG GTTACAATGT TTAGCCGGTT TATTAACGGT TTTTCGAATT 
    GATTTTGGCT GAAATACAGG TATGTCTGTT AGGATGATAA AATCTGGTTG 
    GAGTACACAT TGATTATACT TGGGTGCAAG TAACCGGAAA TTTGTTACGT 
    TTTCAGGCGA TTTATTTGGA GCAAGTGTTA CGTGAAGGAT TCTCGCACCC 
    ATCGGTAAAC GGTATAATGC TATGGACCGC ACTTCACCCA AACGGCTGTT 
    ACCAAATGTG CCTCACTGAC GATAAATTCC GGAACCTTCC AGCCGGAGAC 
    GTGGTGGATC AGAAGCT

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR