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16-1965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184855 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -341; Region: promoter
    2. Chromosome: 5; Position: 11185859 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1345; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4684; Region: intergenic
    3. Chromosome: 5; Position: 11186361 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1847; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4182; Region: intergenic
    4. Chromosome: 5; Position: 11186864 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2350; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3679; Region: intergenic
    5. Chromosome: 5; Position: 11187366 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2852; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3177; Region: intergenic
    6. Chromosome: 5; Position: 11187868 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3354; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2675; Region: intergenic
    7. Chromosome: 5; Position: 12824288 [Map]; Strand: c
      • AT5G34358.1 - [+] show detail - transposable element gene
        Distance: 21440; Region: intergenic
      • AT5G34376.1 - [+] show detail - transposable element gene
        Distance: 13550; Region: intergenic
    8. Chromosome: 5; Position: 12867007 [Map]; Strand: c
      • AT5G34412.1 - [+] show detail - transposable element gene
        Distance: -25170; Region: intergenic
      • AT5G34431.1 - [+] show detail - transposable element gene
        Distance: -21187; Region: intergenic
    9. Chromosome: 4; Position: 3054762 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1988; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6213; Region: intergenic
    10. Chromosome: 4; Position: 3055260 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2486; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5715; Region: intergenic
    11. Chromosome: 4; Position: 3055758 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2984; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5217; Region: intergenic
    12. Chromosome: 4; Position: 3057221 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4447; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3754; Region: intergenic
    13. Chromosome: 4; Position: 3057719 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4945; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3256; Region: intergenic
    14. Chromosome: 4; Position: 3058715 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5941; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2260; Region: intergenic
    15. Chromosome: 4; Position: 3059213 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6439; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1762; Region: intergenic
    16. Chromosome: 4; Position: 3059711 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6937; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1264; Region: intergenic
    17. Chromosome: 4; Position: 3060209 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7435; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 766; Region: intergenic
    18. Chromosome: 4; Position: 3060707 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7933; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 268; Region: intergenic
    Flanking Genome Sequence: 16-1965-1 - 3-prime edge 
    AACACGAGGA CTTCCCGGGA GGTCACCCAT CCTAGTACTG CTCTCGCCCA 
    AGCACGCTTT ACTGCAGAGT TCTGATGGGA TC

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G34358.1

Model type
Transposable element gene
Short Description
transposable element gene
Link
InterPro Scan - TAIR

AT5G34376.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.4e-31 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT5G34412.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 8.7e-05 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT5G34431.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR