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Mutant Lines
16-2014-1

16-2014-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 23107847 [Map]; Strand: w
- AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
Chromosome: 3; Position: 23134761 [Map]; Strand: w
- AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)

GNTGNAGCTA GAAACAGGNC NATCATCNNT NAAGAGTGTT GANGAAAAAN 
CAAGAATCTA GNGCAAGACA NGNNNANCGA NCCCTNGGNG CAGGCNTNCC 
CTAGCNNGTN GAAAACGGTT CTAAAACCTC AACGATGAGA TCATGTGATA 
AATCTAGTTT CATTTCATCA AGAACAGCTT CCATATTTCT ATCTAACGCA 
AACAATTCAT CAATCACTTT GCAGACTCTC TCTACTTCTT CCGGATTAGT 
ACTTGATTCA ACACAACTGA CCCCAGTTTC TTCATCATTA TCGCATTCAG 
ATTCAACTTC TTCATCACAT CCATCACTAA CATTAGAACT ACCACTAGAG 
AAACCTCTAC ACCCAAGACT CGCATCAAGC AGTTGTACAG AGGAGTGTGG 
CAATGGAATT TGACGGGNAG GATGATAAGT NGAAGAATGA ATCATACGAG 
AGAAGAGAGC ACCGGAAAAN NGNACTTNCT NTTTNTNCTT NCCCGCCGNT 
TCNNCGGNTT TGNCTGGNAN NGAATNNNCN NCCNGGGCCG

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 4793242 [Map]; Strand: w
  - AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 3; Position: 23134684 [Map]; Strand: w
  - AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 16-2014-1 - 3-prime edge
```
AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA 
CAGTTCGAGA CGATGGTTTC GGTACTCGAA GAGATGGGTA CGAAAGGTCT 
ATTGACGATG GAGACATTCA CTATCGCGAT GAAAGCT
```

AT3G62470.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62540.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G14820.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link: InterPro Scan - TAIR