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16-2038-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18101018 [Map]; Strand: c
      • AT4G38770.1 - [+] show detail - proline-rich protein 4
        Distance: -2453; Region: intergenic
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 278; Region: intergenic
    Flanking Genome Sequence: 16-2038-1 - 3-prime edge 
    CGTAAAAATA TCCCGACGAA TGCAGATCTG GATGTTGACA TATTCTCTGA 
    ATATACAGTT ACATTGTTTA TAAAAACTCA CATAGATATA TTGAATATAA 
    AGGACAAAAG GACCCAGAGA TTTTTACTAC NTTGTAGAAG TAAAACACAA 
    AGGTTGGTGT CCAGAATTGT ACGGATGGAT TGAAAATGTG CGAAATAATA 
    TATAAATGCT ACNTTATCTA ACAAAAGTAA AACAATGTTG ATACATCTTA 
    TATCTGACAA TGTCACCATG GGTGCAATGA ATT

AT4G38770.1

Model type
Protein coding
Short Description
proline-rich protein 4
Curator Summary
Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
Computational Description
proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38780.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Computational Description
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR