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16-2192-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18838965 [Map]; Strand: w
      • AT2G45730.1 - [+] show detail - eukaryotic initiation factor 3 gamma subunit family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G45740.2 - [+] show detail - peroxin 11D
        Distance: -621; Region: promoter
      • AT2G45740.3 - [+] show detail - peroxin 11D
        Distance: -623; Region: promoter
      • AT2G45740.1 - [+] show detail - peroxin 11D
        Distance: -751; Region: promoter
    Flanking Genome Sequence: 16-2192-1 - 3-prime edge 
    ATGGTGACCG TCTCGTCTTC GCTCGTTTAT CTAGTGGCGC GTGCGTCTTC 
    TTCCTCAATA TCTTAATTTA TCCAGATTGA TTCTCATCCT CAATTCTATT 
    GTTTTAAATT TTTTTTTTGA TTCTTTTCTC TCCCTCTTCT TGCAGTATAT 
    TAAAAATTGG GAATAANAAT TATTCTTTAA AGCCATTGAT CGGANCTCCG 
    TTNGGATCTC TGTTCCAAGT CNAAACCGGA NAANATGGTT CTTTCCTCTC 
    TCGCATTCTT CCCATTAAAC AAGGTTNGTT ATTATTGAAT ACCAAATTCA 
    CATTATCCTN TATACTGAAT ACAAAANAAA CTGAGTTTTT GTAAATNGGT 
    TATANATGGA TNGAATTTGG TCTAATTGAT GTTNGCTTAC NCANAAAGTA 
    ACAGTAATAA TGTTATGGAC NATTCNANAN ATAATCGAAA AATCGTCNAC 
    AATAATGAAN CTCAAAATCT TACTGGNGAA AAAATTGAAN CTATGCGGAG 
    GTTAAAAAAA TT

AT2G45730.1

Model type
Protein coding
Short Description
eukaryotic initiation factor 3 gamma subunit family protein
Computational Description
eukaryotic initiation factor 3 gamma subunit family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic initiation factor 3, gamma subunit (InterPro:IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro:IPR017423); Has 402 Blast hits to 378 proteins in 203 species: Archae - 0; Bacteria - 4; Metazoa - 118; Fungi - 152; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45740.1

Model type
Protein coding
Short Description
peroxin 11D
Curator Summary
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational Description
peroxin 11D (PEX11D); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, peroxisome, chloroplast, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11E (TAIR:AT3G61070.3); Has 286 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 35; Plants - 176; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45740.2

Model type
Protein coding
Short Description
peroxin 11D
Curator Summary
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational Description
peroxin 11D (PEX11D); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, peroxisome, chloroplast, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11E (TAIR:AT3G61070.3); Has 286 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 35; Plants - 176; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45740.3

Model type
Protein coding
Short Description
peroxin 11D
Curator Summary
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational Description
peroxin 11D (PEX11D); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: peroxisomal membrane, chloroplast, peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11E (TAIR:AT3G61070.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR