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16-2257-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90272 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2257-1 - 5-prime edge 
    CGTTANANNC TAACAAANTC GGTTATACGA TAACGGTCGG TACGGGATTN 
    TCCCATCCTN NTTNAATCCC TGNAATCANC ANGGCCGNGC CGGACTTGCN 
    AACNTCGNAG CTGAGCAANA GTNNCCAAAC TCCTCCACCA TGTTCCCAGA 
    GCATAAACAG ACCAGACGCC AGTCGTTTCA ATCTGCTTTG AGGCTCAAGC 
    TCGTCTCAGA GACCCTATCT ACGGCTGCGT CTCTCACATC GTCTCTCTTC 
    AGCAACAGGT TAATTATTCT TTTCATAACG TTTAATTATA TGATTAGTAC 
    TATTTATGAT GGGAAATTGC AACAGTTTTA AGTTGATCTA CTGTCTCTAT 
    ATCGTCACGT TGATCATTTT ATTTTAATCA TTTTCTATGT AATTATGTTT 
    TTAACTTCTT CTTTTTTTTT GAANAAAATT GCGTTTTCAA ACTTTTTTTT 
    TTNAAAGNAA ATTTTTNNTT TNNACTTANN GTTCANTNAA ACTNNAAAGT 
    NANGTCCTTT TNCCNATTTT AGGGATCNCC TNNGATGGGA TTTNTNGGAT 
    CATTTCCCNT NNNGCANGGN GGNAAATTNC CCTTTNTTNG GCNTANATTT 
    TTTTTTTAAA NCNNTCCNNN NNNGGNNCTT TAAGGGNNAA NTTTTTTNGT 
    TTTTGNCCCN NNNNAAAAAC AACNNNNNCN TTNAAANAAA AAANTTTTAA 
    AANCTAAANT TTANANAGGG GGNNTANGGG CTTTTGNCTT TGNGGGNAAN 
    NNATNTTNTT NATTTNANAN GGGGGGGNCA NGNGNNCCTT TTTTTNNNGG 
    AGAAAAAAAN NNTNNNCCNG GCNNGNGANC CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90299 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2257-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGTGAACCG CCGCGAAGTG CGCCGCTCCT TGCTCGGAGT CAAAGTAAGG 
    AGCGAAGATG CAGCCAGCGA CACACTTCCT TCTCAAGAAC TTGCACGCGC 
    CGCACGGTCC TCCTCCTCCA CCGCTGCTGC TGCTAGGGTT TCCGCTACTG 
    CTCATCTTCC TTTTCTACCA CACAAGTCCT TTTTATTTTC CTTTCCTTTT 
    ACTAGCTAAG TGGTGATTAG GGTTTTGAGA TACATGGATT TAACTCATCG 
    AGATTATGAT GCTTTTTGGT TCGTGATTAG AGAAAAAAAA GAAAGGGAAC 
    GTTTGGGAGA GAAGAAAAGA GAGAAGGAGG AGATCGGACG TAAGCAAAAC 
    TAGGGTTTGG TTGTTGGTAG ATAATAAAAA AAGTAAAATA ATAATTTAAT 
    TAGTCTTGTT ATTACCAAGA CTAAAAAATA AAAAAGAGGT TAAGACAAGA 
    AGAAGAAGAA GAAAAAAAAG ACTTCAAAGC AACGCGATGG AGCGTACTTG 
    TCTCGTGTTA AGCTCTTTGC GTGAAGCAAA ACATTCCATA TCTTTCAACT 
    TCTTCATTGT TATTCCCTTT CCTTCACTTT TTCTACTTNT GGTTTAATTT 
    TATTTTTGTT ACATCGAACC ACACAACTNT CTTATGGTAT ATACCAATTG 
    TAATATNTGA ACATTCAATC TAATACTATG ANAAATTAAT TTTACAAACA 
    AATAAATGTN TAAAATAANC T

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR