1. Home
  2. Mutant Lines
  3. 16-2278-1

16-2278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Fruits (Siliques)::short)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18762715 [Map]; Strand: w
      • AT5G46260.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-2278-1 - 5-prime edge 
    NNTANCANCA NCAGCGCCGG NNNAANAGAC CGATCCANNC GGNGCACTNG 
    ATATTNGNAA TAGGGATNCT CGAGGCCGAC AAAGTNCTCA AAATCCTNAG 
    ATGTAGTTAA AAGCAGTTTA CGCAAAACAT CATNGGCTAT TTCTNCAATC 
    ATTTTTGCTT CGTNATCCCT AATANGGTGA AAGATAATTT AAGAAATATG 
    AAACAACNAT TNTATTTTAA GATGTATCCT AATAATGAAT TTAGNATAAA 
    AATCATACCA TTTGGAAGAA TCANATCCAA GCATATTAGC TACATGAGTC 
    AACGCTTTCT TCCATTGGTT TTTCACTTCC TCTGTTTGTC TCTTGCATGT 
    CTTTTCAAAG ATCTTCCCGA ATT

AT5G46260.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class) family
Computational Description
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR