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16-2289-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22204080 [Map]; Strand: c
      • AT3G60110.1 - [+] show detail - DNA-binding bromodomain-containing protein
        Distance: 2629; Region: intergenic
      • AT3G60120.1 - [+] show detail - beta glucosidase 27
        Distance: -1867; Region: intergenic
    Flanking Genome Sequence: 16-2289-1 - 5-prime edge 
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACCCTCCCTC TTGACGAATT TAAATTGAAT 
    GCTTCTGAAT TTTTCAGCCT AAAACTGAAT ATCTGTGAGT AAATTCGCTA 
    AAGAGCAATG TGAAACAGAA TTAGTAACAA GTTGTATCAA AGTTTGGCAA 
    TCTCCTTCCA TGATGACATG TGTATAGCTT CGGATC

AT3G60110.1

Model type
Protein coding
Short Description
DNA-binding bromodomain-containing protein
Computational Description
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G44430.1); Has 40209 Blast hits to 25016 proteins in 1620 species: Archae - 68; Bacteria - 5263; Metazoa - 15621; Fungi - 3406; Plants - 1675; Viruses - 190; Other Eukaryotes - 13986 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60120.1

Model type
Protein coding
Short Description
beta glucosidase 27
Computational Description
beta glucosidase 27 (BGLU27); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G44490.1); Has 11429 Blast hits to 11081 proteins in 1472 species: Archae - 140; Bacteria - 7815; Metazoa - 722; Fungi - 203; Plants - 1548; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).
Link
InterPro Scan - TAIR