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16-2352-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84803 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: intron1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -598; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -613; Region: promoter
    Flanking Genome Sequence: 16-2352-1 - 5-prime edge
    CCCCCGGCGT TGGCTCTGCT GTAGAAGACA GACCACCAGG TATTTATTAT 
    TAGGAGAAAC TCCACTTTCT TGATTGATTT TTATTATCAT CTCCACACTG
    CTTTGGGTTG TTGATATAGT TAGTTAGTTA GTTAGTGATG AATTACACAC
    TGCTGCTGTG GCAGATTCAT CTGAAGATAG ATCAAGTTCG GTCTATGAGT
    TTCTGTATCC CCGTAAAGAG GAGCTCCCTG ATGACAAAGA AATGACTATT
    TTCGACCATC TCGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84919 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -482; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -497; Region: promoter
    Flanking Genome Sequence: 16-2352-1 - 3-prime edge
    GCCGGGGGTG GTCTCTGTTG GTGAATCGTC GTCATTGAGA GCTGACACCG 
    GCCCAAAGCC TTTGCTCCGG CGTTGCGTGA CGGAGTATCG GAGTCCAGCT
    TCCCTCCACG AATTGCAGAA AGTTACAGCN GTAAGGACAA CGCNTGCTTT
    GTAGGCGAAC CCAAGTTGCG AGTGGTGAGG CNGGAAATGG TGGATAAGAG
    CAGAACTAGT GCTTGTGCTG CTCATCTCTC GAAGAATCCT CTCTCGTATC
    GTATGTTGTT GATTTTCAAT TGCAAAGAGA GCTTCAGAGA AGGAACGATT
    GGTTCCGGTC GAGTTTCGTT GCCCACATTT GATATTTTCC AAAACAACCC
    AATCCTTTTT TTTTTNTCCG TNAAACCTTT TTCCNTNANA AACTTGNTAA
    CNCANTGTAA ACAACNTCNT TTTTAGGAAA AANCAAAGGA CCTTTNTNGG
    NCCTTTTNTN GNTTTNTAAG GCCCNTTANT NCGGCCCATA AAGTAAGTTT
    NTACTANTAG GGATNANGGG NGTTNACTTC NNANTTNANA NAAAGGGCTC
    CCTGGGNTTG TNATTTTNCC CCCNANNCCA ATGGGCAAAA ANANTCNGGN
    GGNAAAANTC CTTAANTTTG ATCCNNGGGN AAACTNCTGG GANCCTANTT
    TGNNTTCAAA ACNTTTTTCC GCTTTCNNAA AAAANAAATA ANNGGTNNGN
    NNGCTTNNCT NNNTTNCCCT TAANTTCTTN AAACAAAATT NCT

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR