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16-2427-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13102592 [Map]; Strand: c
      • AT3G32110.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-2427-1 - 3-prime edge 
    ATNTGNGTGT GCTAGTACGT GNTCATNTNA NCCGCANCGC NCCACNNGNA 
    CNTTCNCTTG GATGNCTGAN CTACGAATTA CCAGCCNGGG CCGTGGGACC 
    ANTCNNGNNC TTNAACATGA TCATNGTTCT GGACNGATNG GTGGNNGTNA 
    TGAAACNCCN ATTGCTGATG ACTNTATTGT GTACNGACCN CGACTTATGG 
    ANANATGGGA CAGGCNTGNN ACATGTCACA CCNGCACACT TTTGTGACTG 
    ANAATNAGCC TNTTGATCTA TTGGCTGTGA TAGTANATAG TGTCACAGGT 
    GCTCATGANC GTNNAGCTTG AGGAATGACT TCAAATGNNC TTTTCACANT 
    CTAATCAGCA NTTGCATTGN NGACTAATGA ANATNCTCCN NCGCTNGATA 
    TGAGTACNTT ATATGGGCGT NTGTGGTAAT TCCAGGCACC NNAACGGGTA 
    CNGGNTGCTC TTCGGTTTNA TGTGNNCNAA GCAATNATGA NNAACTCCGA 
    GCGNAGNAGA AGNCTTTTGT GTAANTATTA ATGNTTNNTN ANNCTGNCGA 
    GNGAGGCTTT TAATNANGTT NTNNATNTCC TTNTGGANCN CCNCNCTCNG 
    TNCGGTCNTA NNGGATCGNA NNNGNACCAT GNACCANTNA CCCCNCGACT 
    NNNTNNNATN TGTCNATCAT TNGACGTGGT NTTTNCCCNN NNTTNTACNT 
    NNNGNTATTN NGGNNTCGNG TNNTGANCGN CTTNNNNTNA TANNTGTNNN 
    GANCNGGCGG NNNANGCGNN CNCGTTNNTC NTANANAGNC GNTCNCCNNN 
    TNCGTANCTT NCNNCCNNGC ANNNNCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13102514 [Map]; Strand: c
      • AT3G32110.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-2427-1 - 5-prime edge 
    CGTAAACCCA CTCGTACACT TCTCCAGGTT GAGGACCAGT TACTCTTTGC 
    TACAGTCCAA TTTTGATCAT GAACATCTCC TACTTTGTAC TTACTCCTCA 
    CGACTTGTGC CCAAAGACTT GAACCATCAT GTAAAACTCT CCAACCTACT 
    TTAGCTATCA ACGCCTTATT CATCGCTGTG GCTGAACGAA TGCCTAAACC 
    ACCCTCCCTC CTTGGTAAGC ACACACGAGT CCAGGCAACT AAATGTTGTT 
    TCTTCTTTTC CAGAGTACTT CCCCAAAGAA AGGCTTCGAG AAACCTTGTC 
    CAGACCATCT AACGTCGACT GTGGCAGTTT AATAGTACTC ATGGTATGCA 
    CTGGGATTGA CGTCAAAACT GCCTTGGTGA GTGTGAGCCG CCCTGCGAAG 
    CTCAACATAC GACCTTTCCA GCCTGCTAAT CTCGACGAAA CTCTTTCAAT 
    AACTTCCCCA AATGTCTCTT TGTTAATCCG TTTCTGCAGA ATTGGCCTCA 
    CTTATTTTTT ATACAGAGCC TANAACTCCC TCTTTAAATT ATACAGAGGC 
    CTACTGGGCA TAAGCCGAGA GACGTCTCGC GCCTAGTACA CGCCGAATAC 
    TTTTATTTAT AAAGCCGAGC TCANTCTCGC ACTTAACCAT CTNACCCGAA 
    CCTTAAAAAA AATNGGCTGN GACGTCAGGG GAAANCCAGC CGGCCCNAAA 
    GCCGACCTNA AAGCT

AT3G32110.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.9e-52 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR