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16-2473-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1027937 [Map]; Strand: c
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -1819; Region: intergenic
      • AT4G02325.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1745; Region: intergenic
    Flanking Genome Sequence: 16-2473-1 - 5-prime edge 
    GTTGTGCTTT ATTGTTCGAT TTCTCATCTT CCCACAGAGC GTCAAACCTT 
    TCACAATAAC ATTGACGGAG GAAGTAATCC GACGACCTAT GAAAAAACAA 
    GACATAGCTA GTGAGGTCAC AGTTCATTCT ATGATTTATA AATATTATTA 
    AAAATAATCT CTTTATCTCT TTCTCAGGCA AAAAACAAAT CTTGAAGGAT 
    TATTGTCCAA ACGCCATTTT TGCATGAGCA TTTTTCATAA AAGCCACTTT 
    TCGATAATGT TCAAATTTGC TATTTTTTGT CACTTGTAAA AACTAGCTAG 
    ATATGTCAAA AAAACAATTA TACAATATAA TTCATAACAA AAACTATACC 
    CTAAAAAACT GGAACTTAAC CAAACATCAT GTGTAAAGTT GTATATAAGA 
    AAATTGCATT TTTAAAAGTT TTTTTGGCCA AATGGCAAAA CTTATAAACA 
    CCCCTCAAAT AAGTCTCTTA TTAGTAATTG ATTATTTCTT GTAATCCAAT 
    GACTTTTGAT GGGTTGGTTC TCCGCTTATT TCTAGTGGCA TCATAAGTCA 
    TCAATCTTAT CCTAGATAAA AGACGAANAG TCGATCGCTC ATAACGCATG 
    CATCACATAA TGAACGAGAA AGCATTTGAT AAACCCCATT GTTTCCAATT 
    CAACCATCAT AGTGCATCAG TGGAGATCCG ACCTACATGT AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1028007 [Map]; Strand: c
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -1889; Region: intergenic
      • AT4G02325.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1675; Region: intergenic
    Flanking Genome Sequence: 16-2473-1 - 3-prime edge 
    ATTTGAAANC NNCAGAGGTA TTTTNTCGAC CGTTACCGAC CGTTTTCATC 
    CAACCTGATC GTTGTAATAG ACTACGGTCA ATCGAACAAG AAGGGTGGTA 
    ATTAAGTCTT TGTACTTCTT GGAAGAAGAG TAGCATATCA ATCTCCAAAG 
    TAGTGATATC TTCTTCATAA TTTCAAGAGG ATGTTGTTGT CAAGATTTTT 
    AAAAACAAGC AGTGATATTT TTGTGTTTGC AAACGTTTTT TTTAGTGATT 
    CCTAAAACTA TATCCCTATA GTGTTTTTTT AAAGTCAACA CAACTCTTTC 
    TCCAACATCT AATATTACAT CTTTTCATAT GTGTCCTTAA TTTAAGTAAG 
    CATATAAGAA GGTTTTTTGT AACTATTTTT CACAACATCT ATTACAATTC 
    ANATCTTTTG CTGAATCTCC ACCACAACAA GATCTTTGTT GTCGTCGCAT 
    CTTCGTCTGT GGATCTATTC CTTCCCCTCT CGGTAACAAC AACAAGCGAT 
    TTAAAAAATT CAGTTCAATA AGAGAAATAT AGTTNAGGAT GTTCCAATTT 
    CTTANATAAG CTCATTTACC TAAAANTCTG CAGCCAAGTT NATNCTNNAT 
    ATTNCCCCCC AAAAAATTNN TTANCTANCT ANNTTNACCT TAATGAATAG 
    CACATGGATC ATTTNAACCA AATCNGAAAC TAGTNTTNTN AATGTATNAA 
    TTTATTTNCA ANGCNNGNTC GGNCNNTNAA TTTAAGACNG TNTCCCAGAT 
    TTCNNNNGAC AGTGCACNCC CGNGTCNCAT TTNCACNGNA NACNCNNGCC 
    NGG

AT4G02320.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02300.1); Has 2764 Blast hits to 2709 proteins in 322 species: Archae - 6; Bacteria - 570; Metazoa - 1; Fungi - 200; Plants - 1958; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02325.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR