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16-2489-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7852490 [Map]; Strand: w
      • AT5G23310.1 - [+] show detail - Fe superoxide dismutase 3
        Distance: 0; Region: exon8 (3UTR)
      • AT5G23320.1 - [+] show detail - homolog of yeast STE14 A
        Distance: -878; Region: promoter
    Flanking Genome Sequence: 16-2489-1 - 5-prime edge 
    AGATCATCAG TGAGCCCTGT ATGGTGACAG TAATGTTAGT GACGCAATTA 
    ACCCTTATTA AGTTATAATA AAACGAAGGC TGGCTCACGT GACCCGCACG 
    TGACTGAGAG TATCCGTTTC CTCTTCTTTC TTTTCTTCTT CTTCTTCTTC 
    TTCTTCGTCT CCTGACAATA GGGATTGACA CCATCGTTCA CTTCAACGTA 
    AAGGTATAAA CTTTCTTCCT CCTTAACGTC AAAGTTTCAC GCGATCGTCT 
    CTGTGGAACT CCCTCAGCAT CGGGTAATTC CCTGATTTTC CCAACTCGCT 
    CTCGCGGAAA CTCTCGATTT CGATTGGGCT CTTGAGGTTC TGTTCATTTC 
    CTCGTCTATG AATTTTCTAC AATTGATTAG GAGTCGTGCC CATAACTGCG 
    TGAGTAAAAA GGGAAAATTT TCTTAAAGAT AAGCAATTTC AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7852477 [Map]; Strand: w
      • AT5G23310.1 - [+] show detail - Fe superoxide dismutase 3
        Distance: 0; Region: exon8 (3UTR)
      • AT5G23320.1 - [+] show detail - homolog of yeast STE14 A
        Distance: -891; Region: promoter
    Flanking Genome Sequence: 16-2489-1 - 3-prime edge 
    NGCGGNGACA GGGNGGCCGN GNNGGNNGAG NAAAAANANA AAAAAAAAAA 
    TTCNNNNGTT ATTTTAANGG GAACGAGTNT TTATTGACCG TTACCGACCG 
    TTTTCATATC TTAAAGCTAG AGAGTCTCTC AAAAGGCAAA AGAAGAGAAA 
    ACTGTCGCTA ACNTACACAG AACANNAAAG ATGGGTCACA TTCAGAAAGC 
    AACTCTNGNC NTTGTTGGTT GGGACTTGGG ACTNGAGACC TCTGTTTGCA 
    AAAATGANAC TGCCCAAGNT NCCAAGGAGT TGAGNTTAGC TTAAGCGATT 
    GGGATGTTGG GTTCACCAAG ATTCACAAAC GCTCCNGCAC GGGCCATCCN 
    ACTGATGGCA GCGTTCCACG ACACCAAGTG GNTCAGAAAT GAGNTTATAT 
    ACNNAAAACN TGNCGCTCNT NGCANCCNNA GAANGANNNA AACAAACACT 
    GATTGAGCCC TNNNGAACGA CCAAAAAGAA CCCACNAATG NTNNGNAATT 
    TAAGNCNAAN GNTNTCANCT NNGNCNGCNN CNGATAANTA ANNAGNGCGT 
    GCCNAGANGA GANACNNAAN CCGCAACANA GNGNNGNACN CNGNNCNCAA 
    AGNNGGACTN NNTGTANGGA NCGGNCAGCN GAAGNAGANA NNTAANGATG 
    GAANCTAAAT ANNANACACA ACGNTANNNC GATGNNGNCC NNNCGCNNAC 
    AGNCANNNAN CNNGTCGGNN CGCNCGNAGG NGCCNAANNC AGNTCCNACN 
    AACNNANACA ANATNNAANA NNAGAGCACN ACCCNCCANN NNNANNGTTN 
    ACACNCNANA NNNGCGAGAN TCAGAANNNN NGAGGGNTNC CGNAANANNN 
    GNAGCGGCNN GCNGCNTANT GACNGCNNNA ACGAANNCNG TGNANCCCAN 
    NCANACANCA NAANNATANA AANNAGAAAN AN

AT5G23310.1

Model type
Protein coding
Short Description
Fe superoxide dismutase 3
Curator Summary
Fe superoxide dismutase
Computational Description
Fe superoxide dismutase 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23320.1

Model type
Protein coding
Short Description
homolog of yeast STE14 A
Curator Summary
Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development.
Computational Description
homolog of yeast STE14 A (STE14A); CONTAINS InterPro DOMAIN/s: Isoprenylcysteine carboxyl methyltransferase (InterPro:IPR007269); BEST Arabidopsis thaliana protein match is: Isoprenylcysteine carboxyl methyltransferase (ICMT) family (TAIR:AT5G08335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR