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16-2503-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13404192 [Map]; Strand: w
      • AT2G31450.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: -15; Region: promoter
      • AT2G31450.2 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G31460.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -584; Region: promoter
    Flanking Genome Sequence: 16-2503-1 - 5-prime edge 
    ACCANAAGAA TCATTCAAGG AAATTGCAAC ATTTGTTTTT TATTTTGCCG 
    AAAATATATT AATTNGCAAC ATTGTGATTA NTAAAGCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11930033 [Map]; Strand: c
      • AT2G28000.1 - [+] show detail - chaperonin-60alpha
        Distance: 644; Region: intergenic
      • AT2G28010.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 546; Region: intergenic
    Flanking Genome Sequence: 16-2503-1 - 3-prime edge 
    GTTCCCGGAT GCTTGTCATC GCAGCTAGAG ATATTCGAGT GGAAAGGATA 
    TAGAGATAGA GTAGAAGGGG AAAAGTTCTT GACATACATT TTAGCCAACT 
    CTAAGCTGTT TAAAGACCGC AACAATCTCT CTGCCCTTCG ATCTTGAAGA 
    TCAAGAGGTG ATCATCGAGG AGTTGAAAGA TATTCCTAGG GTTTCAACAA 
    CATCTCACCT TTTGTTCATA TGAAAATTCT ATGGAAGCT

AT2G28000.1

Model type
Protein coding
Short Description
chaperonin-60alpha
Curator Summary
Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.
Computational Description
chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28010.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G28030.1); Has 3345 Blast hits to 3331 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 954; Fungi - 478; Plants - 1718; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31450.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14067 Blast hits to 14061 proteins in 2669 species: Archae - 367; Bacteria - 9308; Metazoa - 224; Fungi - 193; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31450.2

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31460.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
Domain of unknown function (DUF313) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G27410.1); Has 122 Blast hits to 122 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR