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16-2506-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25070666 [Map]; Strand: w
      • AT5G62430.1 - [+] show detail - cycling DOF factor 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-2506-1 - 3-prime edge
    GTTGCTGATG AAGAAGAAGA AAAGGTACTC ATTATTATGT CTACTTTTTT 
    GTTTCTTAAA GAGCTGAATA TGTTTTGTTA TATACGAGTA TAGAGAAAAT
    GAGTTTTGGT GTTTTGAAAA GGGTATTTGA GTTTTTGTTC ATTTTCCCAT
    CAAAGGCAAC TTGTTTTCTT TTTTTGGTAT CGTTTTATAT TCATAGTTGA
    TGAATTGGTA AACTTTTTGG AGAATT

AT5G62430.1

Model type
Protein coding
Short Description
cycling DOF factor 1
Curator Summary
Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
Computational Description
cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1125; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR