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16-2558-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9438300 [Map]; Strand: c
      • AT1G27170.2 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
      • AT1G27170.1 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
    2. Chromosome: 1; Position: 9444905 [Map]; Strand: c
      • AT1G27180.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 16-2558-1 - 3-prime edge 
    GATGAAACTG AATCTGGGGA ATAATTATTT TCATAGTCTT CCGTCTAGCC 
    TCGTAAAGTT ATCAAATCTC CAAGAACTTT CATTACGTGA CTGCCGAGAG 
    CTCAAGCGTC TTCCCCCTCT TCCATGTAAA CTTGGAGCAG CTAAACCTAG 
    CAAACNTGTT TCTCATTGGA GAGTGTATCC GACCTTTCAG AGTTAACGAT 
    CTTGACGGAT CTCAATCTCA CAAACTGTGC GAAAGTGGTT GATATTCCAG 
    GCCTAGAGCA CTTGACGGCT CTGAAAAGAT TATACATGAC CGGATGTAAC 
    TCCAACTACT CCCTTGCAGT AAAGAAAAGA CTTTCCAAGG TGATTCCAAA 
    AACTCCACAG AATCTCATCA TGGCCTATTT AAAAAACTTT CTTACACCAC 
    TTTTGATTTG TTACTGCAGG CTTCTTTGAA GATGATGCGG AATCTGAGCT 
    TGCCTGGAAA CAGGGTCCCG GACTGGTTCT CGCAAGGCCC TGTCACATTC 
    TCAGCTCAAC CGAACAGAGA GCTCAGAGGT GTAATCATTG CTGTTGTTGT 
    GGCTCTTAAT GATGAAACCG AAGATGACGA CTATCAGCTG CCTGATGTGA 
    TGGGAGGTTC AAGCCCAAAT TCATAAACTT GATCATCACA AATGCACCAA 
    CACATTGCAT CTCTCCGGAG TGCCTANAAC AAAATAACGA TCAGCTTCAC 
    ATNTGCCGAT ACTTAGCTTT TTACCCACTG GTTACGATGT TGAAAGA

AT1G27170.1

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27170.2

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27180.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Computational Description
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink).
Link
InterPro Scan - TAIR