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16-2596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84860 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -541; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -556; Region: promoter
    Flanking Genome Sequence: 16-2596-1 - 5-prime edge 
    CNTTTAAAAA CANCAAAATC GGTTNTTNGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATACA NAGCCAACGC CGGGGGTGGT CTCTGTTGGT 
    GAATCGTCGT CATTGAGAGC TGACACCGGC CCAAAGCCTT TGCTCCGGCG 
    TTGCGTGACG GAGTATCGGA GTCCAGCTTC CCTCCACGAA TTGCAGAAAG 
    TTACAGCGTA AGGACAACGC TGCTTTGTAG GCGAACCCAA GTTGCGAGTG 
    GTGAGGCGGA AATGGTGGAT AAGAGCAGAA CTAGTGCTTG TGCTGCTCAT 
    CTCTCGAAGA ATCCTCTCTC GTATCGTATG TTGTTGATTT TCAATTGCAA 
    AGAGAGCTTC AGAGAAGGAA CGATTGGTTC CGGTCGAGTT TCGTTGCCCA 
    CATTTGATAT TTTCCAAAAC AACCCAATCC TTTTTTTTTT NTCCGTTAAA 
    CCTTTTTCCN TCACAAACTN GNTANCNCAN NGTAAACAAC NTCNTTTTTA 
    GGAAAAANCA ANGGANCTTT NTNGGNCCTT TTTTNGNTTT TTANGGCCCN 
    TTNCTNCGGC CCNTANAGTA AGTTTNTNCT AGTNGGGATN ATGGGNGTNC 
    NCTNCCCAGT NNACNCANAG GGCTCCCTNG NNTTGNCAGT TTTCCNGCCA 
    GCCCGATGGG CAAANANACT CCGGNGGAAA AATCCCTAAA TNNNATNCNC 
    GGGANACNNT GGGACCCTAG TTNTGTCTTA AAACCTTTTT CCGTTTCGTC 
    ANAATGCATT TACAGGTCNG ATTGGCTTCN CCCNCTTGGC NCTTANTTNC 
    TANA

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR