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16-2637-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158394 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2637-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTCA ATTAGTGATG AGAAAACGGT AAGCGAGACC 
    GATCAAAAGG AAGAAAGCGA CGGATTTGAG GAAAATTTGA TTGCGTTGGT 
    GAGAGGAACC AAATGGGGTT CCTTCAATCT TGATGCTCTT AGATATTAAT 
    CTCAATGAAT CCATTGCAAT TAGAGAGAAG AGCAGATCAC TGAGTTTTTT 
    CAAATGTTTC CCTAATTAGC TTTCTGGAGG TTTTTGGTTG GCGTTGAAAG 
    CGAGGAACTT CATCATTATA AAAAAGACAC AGCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158395 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2637-1 - 3-prime edge 
    NAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCAT 
    CTAATTCCAC CGTCTCTCCG GTTCCCACCG TTCGATCCTC GCCGGAATCT 
    CTCCCGCCGG ATC

AT1G01430.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 25
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR