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16-2683-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6904800 [Map]; Strand: w
      • AT4G11350.2 - [+] show detail - Protein of unknown function (DUF604)
        Distance: 575; Region: intergenic
      • AT4G11355.1 - [+] show detail - pre-tRNA
        Distance: 685; Region: intergenic
    Flanking Genome Sequence: 16-2683-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTAG GCACGGCACT GAAGCCATCC ATTACTGCAG 
    TTCTTTCGTA GCTTACAAAC TTATACTAAA TCGACTAGTC TTTAACATTA 
    TATTTTTGTT TCTCTTTTTC AAGTACCGTT AAGCGGTTAG CCATTACGTG 
    GAGGATCATA TAGTAACTTA TATAATATGA TTACATCTTT ACTTGATTCA 
    AACTGTCTGT ACTACAACAA ATTCTATATT TGCAAGCTAA GAATTACTAA 
    TCTGATATCA CTGTGTAGCT AAATTTTGAA AATTCAGTGT GTTGCTAAAA 
    TTTGAAAATT CAGTGTGTTG CTAAATTTTG AAAATTCAGT GTGTTGCTAA 
    ATTTTGAAGG TTCAGTGTGT TGCTAAATTT TGAAAACTCA GTGTGTTGCT 
    AAATTTTGAA GATTCTGCAT GACTAAACTT TAAAGATATT TCTGAGAAAA 
    CAAAGTGAAA CGCTCTGACA TTGGATAATT CATTGTGTCT CTTTGTGCAA 
    ACCGAAAATA GAACTACGAC AAGATGACTT CATCACCGTT ATGTCTGAAT 
    AATAAAGTAC TAAAGAGTGT CTAAATGCGT GCGAATTAAA GTATGAGTGC 
    GTCCAAATTA TGGGTTTCGT ACCAAAGGCC CAATATCAAA GAATGTGTAT 
    CTTTTAGTGG GAATAATAAA ACGACAAAAA ACAAGGATAA ATTCACAACA 
    AAAAATGGAG ATGCCGGGGT ATCGATNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10415225 [Map]; Strand: w
      • AT5G28468.1 - [+] show detail - transposable element gene
        Distance: 5529; Region: intergenic
      • AT5G28469.1 - [+] show detail
        Distance: 326; Region: intergenic
    Flanking Genome Sequence: 16-2683-1 - 3-prime edge 
    GGGCTTGAGG CAAGATTGAA ACTGGGGCCT TTTCAAAATT TTTTTTTTAT 
    ATTATAAATA AATGTAAAAC TGTTTTTGAT NTAATATAAG GAAAAACTAA 
    ANCAATAAAC TAATAAAATC TAANATATAA TTTTTCTTTT TTCAGTTTCA 
    ATAAACTCTT TCACTAATTT CTCATAATCC AAATTCTTAA CTAGTTCTCT 
    TTCNATANAT ATGATAGCTA NACCATTCAA TATTTCTTGN GACATTGTTG 
    ATCGCAAATA AGTTTTGATC ANCTTTAATT TTGAAAAGCT

AT4G11350.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF604)
Computational Description
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11355.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ala (anticodon: AGC)
Link
InterPro Scan - TAIR

AT5G28468.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.9e-46 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT5G28469.1

Model type
Pseudogene
Curator Summary
pseudogene of disease-resistance protein
Link
InterPro Scan - TAIR