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16-2709-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252783 [Map]; Strand: c
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: -185; Region: promoter
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -28; Region: promoter
    Flanking Genome Sequence: 16-2709-1 - 5-prime edge 
    GCTCCGTCGC CAGCCATCAT CGTCTTCAGG CAAAAACAAA AACGTCTACC 
    GTTGTTGAAT TAATGATGCA AACATCGTGT CGTTTTTTGG ACAACATAAA 
    CTTTAAATGG GCNTTAAGAG AAAGTAAAAA GAGTTAGAAG GCTCAAATAA 
    ACTTTAAATG GTTTTAAATG GGCCTTAAGA GAAACTAATG GATTTTGAAG 
    GCCCAAAATA AAGATTACTG TCCGAGACAT AAAAGACCCT GAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 353961 [Map]; Strand: w
      • AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron5 (CDS)
      • AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron5 (CDS)
      • AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron5 (CDS)
      • AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 16-2709-1 - 3-prime edge 
    GACGGAGCAG ATCAAAGTCG ACGCTTTTTC GTGGCGGTTC ACGTCGGGGC 
    CGGATATCAT GCGGCGGCTA GACTAAACCC TCTATTTAAA TAATACCTGA 
    GCAGCAGCAN CAGAATGCTC AGGAGAGCTT TTTGGGTCTG CCCAAGTCAC 
    AGTTGGAGCG TTACCCTCAA GCT

AT4G00585.1

Model type
Protein coding
Computational Description
unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.1

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.2

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1).
Link
InterPro Scan - TAIR

AT4G00830.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00830.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00830.3

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link
InterPro Scan - TAIR

AT4G00830.4

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link
InterPro Scan - TAIR