1. Home
  2. Mutant Lines
  3. 16-2728-1

16-2728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44678 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1481; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 597; Region: intergenic
    Flanking Genome Sequence: 16-2728-1 - 5-prime edge 
    ATTAAAGCTA AGTTTTGCAG CAAAATTATA TATATTGCCG TTTAAAGACT 
    CAATATATTT CTACCTTTTT CGCTAACAAA TTTCATGGAC TCATTTGTGC 
    TAGTTTATAT AAACCTTGTT ATAACCATTT AAATTCGTAT ACGTACGTAC 
    GGAGCAATAC AAGAAACACA TATAAAGCAA AATCCTATAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44562 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1365; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 713; Region: intergenic
    Flanking Genome Sequence: 16-2728-1 - 3-prime edge 
    GCTTTAATCA TGATCTAATG ATATTTTCTT TAATTTCCTT TGCCAAATTA 
    ATCACATGCA CGGATTTTTG GCAAGTTATG TGTCGAATT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR