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16-2749-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 46763 [Map]; Strand: w
      • AT3G01140.1 - [+] show detail - myb domain protein 106
        Distance: 0; Region: exon5 (CDS)
      • AT3G01142.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-2749-1 - 5-prime edge 
    TCCTCATAGT AGTTATACTC ACTCTCATTC CCCACGCCCG CCGTCGCTTC 
    GTTTTTCCCA GTGGGTAAAC CCCGGCCGAC CGAATCACCG ATCAATAGAC 
    TCGTGAATCC TTCTCCTATT CCTCCACTAC CACAGTTGAT CTGCCTAATC 
    CAGTCGTGTT CGTGTTCTTT GACCAGACTC ACATCGGAGG AGGTTGACGA 
    AGATACGGCG AGTTCAATCA TCGCCGAGGA CTCATTGTTG TTATTGTTTC 
    TATTTCTTCT GCTATCCGTA GGGATTCCTA AAGGCATCAG AAGATTCTCG 
    GAGAATGTCA CCGTCGATGT CGGAGATTCA AGCTGTTGGT CTCCGTTTCC 
    TGTCACAATT TTCCATTGAT ACGTTACCAA AACCAATCAA AGTTGAGAGT 
    TTTTTTTAAG ACGATGTGTC CCTTACCTTG GTTTGGTTTA GTCCAGTTTG 
    TTGATGTTTT TTGAGTGAAG CAATGTTGTT GAGGAGCTGC TGATTTGTTA 
    AGGTTGTTAT TGTTTTGGGA ATGCTGTAAA TGGAGAAGCT

AT3G01140.1

Model type
Protein coding
Short Description
myb domain protein 106
Curator Summary
Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.
Computational Description
myb domain protein 106 (MYB106); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8850 Blast hits to 8247 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 505; Plants - 5831; Viruses - 3; Other Eukaryotes - 1803 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01142.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G01140
Link
InterPro Scan - TAIR