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16-2790-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 391844 [Map]; Strand: c
      • AT5G02025.1 - [+] show detail - pre-tRNA
        Distance: -1881; Region: intergenic
      • AT5G02030.1 - [+] show detail - POX (plant homeobox) family protein
        Distance: -3790; Region: intergenic
    Flanking Genome Sequence: 16-2790-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAACAGG TCATAGCTAA ATAACATCCC AACCACAAGA 
    ACTATTGAAA TTAACTTTTG GACGACAACA TGCATAAATA TATGTAAAAA 
    TGTAATACAC GATAATACGA AAGTGTCACA TCACNGAATA AAAATCAATA 
    TACCAAGTAA TTACTTTTTA CTTAAAAAAT AACTATAATC GGCACATGTT 
    TTGAAAATTA AGGTCCATTG GACCAACTTC CTAATTGAAT AATAAAGAAA 
    AAACAATTAC ATTAGCATGA TGTATTAATT ATCCGTAACA TAATATGATT 
    TATGTTCAGC TACGTACAAT AAATGAATCT TGTCATTCTA CGATTTTATT 
    TGGAACATTT GTTTTGTTTA TTTGGTTCAA CCCTTAAAAC TTTTTTGTAG 
    TGTATATACA TAAGGCACCT AGGTTTCGTT TTTGACCAAA ATAAAATAAA 
    ATAAAAATAG ATCTTTGAAG TTGATCTATA GGGACAGTAC AAAATTTAGT 
    AGTACGTAGC AGTTAATTAA AGTAACATTA CAACTGCAAA GTACTCAAGT 
    TCTGATAAAT GCCCATTGGG ATTCTCAGGT GACGTCGTCA TGCTAACGTC 
    GTTTAGATTA TTAAAAATAA ACATTCAAAA AGATTATTAC CGTTTGATGA 
    TTTTTCTCTG CACAAATCTT TTGCTTAGTG AGAATCCACC GAGTTTGCCG 
    GCNNTTGATG TAACGGCGGT TTNTCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 391848 [Map]; Strand: c
      • AT5G02025.1 - [+] show detail - pre-tRNA
        Distance: -1885; Region: intergenic
      • AT5G02030.1 - [+] show detail - POX (plant homeobox) family protein
        Distance: -3786; Region: intergenic
    Flanking Genome Sequence: 16-2790-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTACCAAGC AATTAATAGT TTTCGCATTA TTATTTTAAC CTTTTGAACT 
    TTGATACATA ATAGGTAAAT TGTTGATACA AACTAGTAAA CGACCAAATG 
    AAGAGGAGTT GTGCAAGTTG AGAAGCGATG CTCAGACTCT TCCCTCAGTG 
    CAAAATGAAA AATGGTAAAT CTGCAGAGTT TTGCAATAGG TCCGTTAGCT 
    AGGTACTAAA TTCAAGTGGT CTGCTAATAC CAGGACTAGC CATAAACACC 
    AAAGTTAATG TGAGGTTAGT CGCGATTGTG CTCGGGCGAC TACAAACTCT 
    TGACCTTCAA GCACTTTAAC AAGTGTTTAC CTCTCTTGAG GACACTTCTA 
    CCTCAAGAAA CCGGATCATC GTTTATGAAA TTAAGTTCTT GATTCGTTTT 
    CACATATTTT ATCTTCTGTT CCTTATAACA TCCTCTTCCT CATGAAGTTG 
    ATTGGCACGA TTCTGAAACA CGGATC

AT5G02025.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gly (anticodon: GCC)
Link
InterPro Scan - TAIR

AT5G02030.1

Model type
Protein coding
Short Description
POX (plant homeobox) family protein
Curator Summary
Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.
Computational Description
REPLUMLESS (RPL); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 8 (TAIR:AT2G27990.1); Has 5109 Blast hits to 5109 proteins in 341 species: Archae - 0; Bacteria - 2; Metazoa - 2052; Fungi - 344; Plants - 2481; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Link
InterPro Scan - TAIR