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16-2801-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23425459 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-2801-1 - 3-prime edge 
    GCCTTTAGAA GCAAGCCAAT TCAAGTTTGA TGGAAGGACT CTGTATTGTC 
    TGGAGCTAGC CAAGTATTTG AAGCAAGATA ACAAAGACGT AATCAACCAG 
    GTGAGAAAAC AGAGTAGAAG CAATCGGTAG AATCTTCTTT GGTAGATGAC 
    ATTCATTGGA ACTGAAAATA TATATATATT TGTCCAATCC AGGAAGTGAA 
    AGAAACATTA TCAGAGCTAA GCTACGTGAC GTCGACACTG TTTACAACGG 
    AGGTAGCATA TGAAGCATTC TTGGACAGGG TACATGTGTC TGAGGTAAAA 
    CTCCGATCGA AAGGGCAGTG GGAGGTGCCA CATCCATGGC TGAACCTCCT 
    GGTACCAAGA AGCAAAATCA ATGAATTTGC AAGAGGTGTA TTTGGAAACA 
    TACTAACGGA TACAAGCAAC GGCCCAGTCA TCGTCTACCC AGTGAACAAA 
    TCAAAGTAAG AAAGAAAGAA AGAAAGAGCT AGTCATGATT TTGTTTCTTT 
    TCACTTGTTG ACAAAACAAA AGCATGTTGG TGAGCAGGTG GGACAATCAA 
    ACATCAGCAG TAACACCGGA GGAAGAGGTA TTCTACCTGG GGGCGATCCT 
    AACATCGGCA TCTCCAGGGT CGGCAGGAAA GGATGGAGTA NAANAGATCT 
    TGAGGCGGAA CAGAANAATA CTGGAATT

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR