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16-2846-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21228330 [Map]; Strand: c
      • AT3G57370.1 - [+] show detail - Cyclin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2846-1 - 5-prime edge 
    GACACGATGC TTCGGGTGTG GTCTTGAATT TAAATATCGC CCGATCGGAG 
    ATGGTTCCCC TGTAGCAGAG AACGATACTG TTCGTCTCCC TGATCCGACG 
    AACACACTTT TAAGCAATAC TGATCTCTCC ATTGTCACCA CCGAGCACAA 
    GAATGGTTCT TTCGATGATT CCTTGTCCCT TAATCTTGAA AATTCGTCAA 
    AACCTCGCTT GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21228446 [Map]; Strand: c
      • AT3G57370.1 - [+] show detail - Cyclin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2846-1 - 3-prime edge 
    ATCGTGTCCT CCTCGTAACG TGATCAGTCA CGACATTGAT CTGCTTGCAT 
    CTCCTGCAAC TGTGACCCCA CTTCATCGTC ATCGAAACCC TAATTTTCTG 
    TCCTGATTAT AGGATTCTTC TTCTTTCAAT GGAGTCGCGT GAAGATTTTC 
    GAGAACAAGA AAATGGAGGG AATGGACAGA ATAAACGGTT GATTCTCATT 
    TTATAGACAA ACAGAGGAGA AGGGTGAGAA TT

AT3G57370.1

Model type
Protein coding
Short Description
Cyclin family protein
Computational Description
Cyclin family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1320 Blast hits to 1319 proteins in 324 species: Archae - 441; Bacteria - 0; Metazoa - 207; Fungi - 261; Plants - 140; Viruses - 3; Other Eukaryotes - 268 (source: NCBI BLink).
Link
InterPro Scan - TAIR