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16-2852-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153852 [Map]; Strand: c
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron5 (CDS)
      • AT4G00355.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -853; Region: promoter
      • AT4G00355.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -869; Region: promoter
      • AT4G00355.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -869; Region: promoter
    Flanking Genome Sequence: 16-2852-1 - 5-prime edge 
    GTTCCACCTA ATAAATTAAG ATAGTGAATC ATTTTACTTC AATTTGTGTG 
    AAAGATTTGA TTATAAAACC TGAAATGAGT GGGGGTACCT CTTTGTTCCA 
    ATTGGTTATG TAGATCATGT ACAAAAGTAT GAGAGTCTGA AGACTAGTCC 
    CACATATCAT ACCAATCCAT ATCCCCTGAA AAACCACATA AAGCAATTTC 
    ATCAACTTAA ACCAAAATAA TTAGACCGGA GGCTATGTGG CTTTACCTGT 
    ACGCCAAGGC TTGTTTTATA ACCTAACAAA AACCCTAGAG GTAATCCAAA 
    AGCGTAGTAA CAAAACAAGT TTATATAAGC CACCGGTGCT TGCCATCCTN 
    TTCCTACTGC AACTCCTGAT ATAACTGGTT GTAAACTGTT GAGAATCATC 
    GTTATACCGA GCAGGTACGC AAGATCAGCT ACCGCCTTTC TCATCTCTTC 
    ACTCTCCGTA AAAACCACAG CAAAGTCATC TCTTGTTATG AGAATTACAA 
    TTGCACACAC TACTCCAATG ACGAGAGACT CTATCACCGT TACNATCACC 
    GAGTATTTCG CAGCTCGTGG ATGTCCCGAT CCTAGCTCAT TCGACACCCT 
    AACACTGAAA GAAACATCTC GCATATATAT ATAAGTCTAA TTAACGCCCT 
    TCTTTAAAAA GACACAAAGA TTGCTTTTCG CTTTTT

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.4

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR