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16-2872-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 337315 [Map]; Strand: c
      • AT3G02010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -650; Region: promoter
    Flanking Genome Sequence: 16-2872-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CATATCAGAT GATGCTCTCA TGCTTGTCAC 
    GCGCGCGAAG CTATATATTA GTACTATTTT GCATATATCC CTTCATTACA 
    TTTACAACGT ACCATATATT TCTATATTAT ATACTCCGTA ATATTACAAA 
    TTATTTGACC AAAAAACTGC TAGACATCTC TATACGTTCT TATAATTTAT 
    AGTATTTGCA GCATTAGTAT ACATTAGTAG TATTTGCAGC ATTAACAAAA 
    CTACAAAACC TCGACCTTGT AAAACTATGA CATAATAATG AGTAAATATA 
    TTTAGGGAAA AAAAAAAAAG GGGGGGGGGG AAANNGNNNN GGGGGGGGAA 
    ACCNNCCCCN NGNANNGGGG GCNNNAAGGG GGCNAACCCN GNAAAAAAAA 
    ANCCCNTTNG GGGGGNNCCN NTTNAAGGGG CCCNTCCCCC TTTTTTTTTT 
    TTTTNNNTTT TANTNAANNN NNGNCCTTTT TAAAAANCNN ANNNNNNGGT 
    AAATNGGGNN NCTTTTTTTT TTAAAANGGG GNTTTTTTTT NNTNANNANT 
    TGGNCCCTTT TTTTTAANNT TTTNGGNCCG CCCCCNTTTT TTATTNNGNA 
    ATTAAAAANG GGGANCCCCC NAAANGGCCC NGGGGNAGGG GNTAAAAAAA 
    NTTTAANGGN ACCCCNNTTT TNTTTTTTAA ANTNCNNATN AAAAAANNGG 
    NGGGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 337316 [Map]; Strand: c
      • AT3G02010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -649; Region: promoter
    Flanking Genome Sequence: 16-2872-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCG 
    GCTCCTTGTC TTCTTTCACT TTCAAACAAC AGTCAACGGC TGCTTTCTTC 
    TGTTTCTTCT TCATTCTTTG GAATTTGAAA CGTATTACTA TTACTAGTAT 
    TTTGTTATGC TGCATAGATA TTGCGTCAAA AGTTATATCA CATCACNGAT 
    ATTGTCTGTT ATGTTTGGTT GTTTATCGAT TTCACTAGGT TCGTTATTTT 
    TATTTTTTGC AAATTTCAAT ATACAAATTA TTCATTTTAG AGTAGTAATT 
    TACCCATGGT TTTTATTTTA TTGGGTCAAA CAGGAACTTT GATCGACGCG 
    TGGCGTGGGA ATATAACGTA TCAATATTTT GGGCTTTTTA GGTGATGATT 
    GTTTTGTAAG CT

AT3G02010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR