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16-2905-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16303549 [Map]; Strand: w
      • AT2G39050.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-2905-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AGTCACAGCC TCATTTTGAT CCTTACGCGC 
    CTACTCCTCA AGCTCCGGCG CCTTACCGAT CAGAAACTCA ATTCGAACCC 
    CACGCGCCTC CGCCTTACCG ATCAGAGCCT TACTTTGAAA CTCCGGCACC 
    ACCGCCTTCA TTTGGTCATG TGAGTCATGT TGGTCACCAA TCACCCAACG 
    AATCTTACCC ACCGGAACAC CACCGTTACG GAGGTTATCA ACAGCCGTCT 
    AATTCTTTAC TGGAAAGTCA TGGAGATCAC AGTGGAGTCA CGCACGTGGC 
    TCACCATAGC TCAAATCAGC CCCAATCGTC TTCTGGTGTC TACCACAAGC 
    CTGATGAGAA TCGTCTACCT GATAATCTTG CTGGACTCGC CGGAAGAGCA 
    ACGGTGAAGG TGTATTCCAA GGCGGAGCCT AACTATAATT TGACGATCAG 
    AGATGGTAAG GTTATTCTCG CCCCAGCGGA TC

AT2G39050.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1708 Blast hits to 1449 proteins in 222 species: Archae - 0; Bacteria - 47; Metazoa - 514; Fungi - 386; Plants - 615; Viruses - 5; Other Eukaryotes - 141 (source: NCBI BLink).
Link
InterPro Scan - TAIR