1. Home
  2. Mutant Lines
  3. 16-2916-1

16-2916-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16831380 [Map]; Strand: c
      • AT5G42100.1 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -161; Region: promoter
      • AT5G42100.2 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -141; Region: promoter
    Flanking Genome Sequence: 16-2916-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCAGAG 
    AGCATCTTTC TTGTTTTGCT TCCTCTCGGA TTCTCACTTC TCTCATGACA 
    GATCATTCTT GTCCTCTTCT CTCTCGGTGC TCTCATTACA ACACTTGCTA 
    GGTATTTGAG ACAGCTACAT GGAGACAGCA CACCAACTAG AACATCTACC 
    ACTCATGTCT TTCAACAGCC TCTTTGCTTC AACTAGTCTT TTTTCCAATA 
    CACCAGAATT TGACTAAATC CAACTAGGTT GATGACCTTG AACGGCTCTT 
    TAAAGTTTAA CCAGATACAA CCCAATGATT CAAAACACCA ATTAGAGCCA 
    TCGCCACACA TTGCTTTGTC TCATATAAAG TAAAAGCACA CCAACATATG 
    AATAAAGTTT AGCTCACAAC AAGAAAGAGT TCAATTTAGC ATATCCCTTG 
    AAAGCAAAAG AATGTTAATA AATTCTCGTT ACAGAGATAA TAGAAGACAA 
    CAAAAGAGAA GATGAGAATG ATAAGATTAA AGACCTAAGT GACGCACTCA 
    CGCTTTGAAT GGAAAAAACA AAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16831373 [Map]; Strand: c
      • AT5G42100.1 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -154; Region: promoter
      • AT5G42100.2 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -134; Region: promoter
    Flanking Genome Sequence: 16-2916-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCCTCTACTG CTTGCTCCAG AGACACTGAC 
    TTCCAGCTCA TCCAAACCAA CATTACTCTT TCTCTTTCTT CTTTTCAATT 
    ATTTCTTTAT TACTATTTCA CTTTGAAATT TAGTGAATCC TAACGCTCTG 
    GTCCCATCAC TGCCTCCTCT ATCATCTTGC TCACAACCAC TCACTACGCT 
    CTCTCTCTCT CTCTCACTTC ATNTANGGCT TCTTCTTCTN TGCAGTCTCT 
    CTTCTCTNTG TTNTGCCTTG CTCTGTTCTC TCTTCCTCTC ATCGTCTCCT 
    CCATCGGCAT CAACTATGGC CNGGTCGCTA ACAACCTTCC TCCCCCTAAA 
    AACGTCATCC CTCTCCTCAA GTNTGGGGGA GCTACAAAAG TCAAGCTCTA 
    TGACGCCGAT CCACAAGCCC TACGTGCCTT CGCNGGCTCC GGCTTCGAGC 
    TCACCGNGGC CCTCGGTAAC GAGTACNTGG CTCAGATGAG CGACCCTATT 
    AAAGCCCANG GCTGGGTGAA GGANAACGTC CAAGCTACCA GNGNGGGCCG 
    TAGACCACNC GGGNNNTANA GNGNNNGANG GNGNNGGGGN GNGNNNGNNG 
    NGGGNGNGNG GGGGGGGNGA GNGGGNNNNN GNANGNNNNA NNAGNANNNN 
    GGAGGNGANA GNNNNNNGNG NGGANGNNNN AGNNNNGAGN NANGNNNNGN 
    NGNNNNNGAG NNNANANNNN GNNNNNNANA NAANANA

AT5G42100.1

Model type
Protein coding
Short Description
beta-1,3-glucanase_putative
Curator Summary
encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
Computational Description
"beta-1,3-glucanase_putative" (BG_PPAP); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42100.2

Model type
Protein coding
Short Description
beta-1,3-glucanase_putative
Curator Summary
encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
Computational Description
ATBG_PAP; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR