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16-2963-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8868659 [Map]; Strand: c
      • AT1G25290.1 - [+] show detail - RHOMBOID-like protein 10
        Distance: 0; Region: intron7 (CDS)
      • AT1G25290.2 - [+] show detail - RHOMBOID-like protein 10
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 16-2963-1 - 5-prime edge 
    CATTTGAAGG CATAATTGGG TTACTTACAT GTCCCCAGTT ATCTATACGT 
    CTGGACATTA GACCCATTGC CTGCATAGTG ATAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8868775 [Map]; Strand: c
      • AT1G25290.1 - [+] show detail - RHOMBOID-like protein 10
        Distance: 0; Region: intron8 (CDS)
      • AT1G25290.2 - [+] show detail - RHOMBOID-like protein 10
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 16-2963-1 - 3-prime edge 
    TTCAAATGTA TTAACCAGTC TCCGATTTTT TCTCGGATCA GTGGTCTGAT 
    AACATCTCCG GTGAATT

AT1G25290.1

Model type
Protein coding
Short Description
RHOMBOID-like protein 10
Computational Description
RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25290.2

Model type
Protein coding
Short Description
RHOMBOID-like protein 10
Computational Description
RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1).
Link
InterPro Scan - TAIR