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16-2990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22335613 [Map]; Strand: w
      • AT3G60420.1 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G60420.2 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: 0; Region: intron4 (CDS)
      • AT3G60420.3 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: -400; Region: promoter
    Flanking Genome Sequence: 16-2990-1 - 3-prime edge 
    GATTTTGGTG TACTTATAAG ATACTCCATG ACTAGTAACT ACCTCAAATT 
    TACCAAACCC ATCACCATTC AAAATCTGCC TTCTCATTTC AACACTACCA 
    CAATAATCTA CCACGTACTT AGTTGCGTCT TTGAAGTAGT TGTAAAATGC 
    AACACTTACT GCTCCCCCTG CAATTTCCCA TCCCAAAAAA AAAANCNAAC 
    TNCAANATTN GGAAAACNTC AATTTNGGTT AAAAACTAAA AAAGCCNTAN 
    CNGNTTGGNT TACAANGNGG GACTAAAAGC ANGTTNTNAA ANGGNTNCTT 
    NTCCGNAANA ATNTTNACNG NNTTANAANN TCNANCCTNA ANGGNTNGGG 
    CAAATTNTCC CCNTTNNGGN CCCTAAACAG NNCAAANANG GAATCGANAN 
    TTNTCNAAAN AAAGTTTAAA TTTNGCCCCC CAAAACAAAN CTTTNNNANC 
    AAAGGACNCG ACAAANCANG NNTTTTAGNG CNCCTTTTTA TAAACCATTT 
    CCACNTTAAA ATNCACNGTT CCTTAAGGAA ACANAGCTTN AAGATCNTGA 
    AATCTGGGNA ANCAAATTNC CCATTCTTNG GGGGACANCT TNCCTNTNAA 
    NNAANNATGG GGGGCGGNNT CTNGGACAAT CCAAATTNAA TNGCCCCCTT 
    ANGCGGGNGA NANNGGGNTT TTTTNAGNCN TAAAANANNT NGAAANGNNT 
    TAATNCAANA GGATNNGCNG GGGTTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22335666 [Map]; Strand: w
      • AT3G60420.1 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G60420.2 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: 0; Region: intron4 (CDS)
      • AT3G60420.3 - [+] show detail - Phosphoglycerate mutase family protein
        Distance: -347; Region: promoter
    Flanking Genome Sequence: 16-2990-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT CCCAGTCCAT GATCATGTAG TTGTAAGCCG 
    CCAATCTCCC CTTTAACCGG TTTATATGTG AATATCTGGT TTAACGGGTT 
    GCTTCAATAA AAAAAAATAT ATAANAATAA TGGTTCAGTT ATTTTCCTTT 
    TCTTCCACAA ATTTTACAAA AATATGTAAA GCTAAAGGGT TGTAATTTTT 
    CTAACACAAA ATTGTNGTTC AACAAGAATT TGTCANAACG TATTTAAATT 
    ACCATTGCTA TAAGCAAGAN AACAGTCTTA GCAAACTGCT GAAACGACAA 
    AAAAAATTGT TCTTTAGTAT TCAAAAAAAA ACTTTGAACT ATNCGTAGTC 
    TTCCTNATGT NTGANGCCTA TNGACAAGTT TNTTACANTA GTAAAAANCA 
    ANNGAAANTC CANTAAAAAG NCANGGGTCT TCTTAATGGC ANGNAANATA 
    CTATACTNGC NTCACCCCTT GAAGCNGCAA GAAACAGAGG AANNGAAGNC 
    TAANTCAAAC NTGGNTGGCC NCCAACATGT TTTNATNATG CNCCNTGGCN 
    ATCGCATTGA TAANTTTGAN CCACANGGGG TNTNNACTGN NGNTNGGCCT 
    TGGGATN

AT3G60420.1

Model type
Protein coding
Short Description
Phosphoglycerate mutase family protein
Computational Description
Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60450.1); Has 266 Blast hits to 264 proteins in 108 species: Archae - 0; Bacteria - 75; Metazoa - 4; Fungi - 55; Plants - 65; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60420.2

Model type
Protein coding
Short Description
Phosphoglycerate mutase family protein
Computational Description
Phosphoglycerate mutase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60420.3

Model type
Protein coding
Short Description
Phosphoglycerate mutase family protein
Computational Description
Phosphoglycerate mutase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60440.1).
Link
InterPro Scan - TAIR