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16-3006-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6658891 [Map]; Strand: w
      • AT3G19210.1 - [+] show detail - homolog of RAD54
        Distance: 0; Region: exon1 (5UTR)
      • AT3G19210.2 - [+] show detail - homolog of RAD54
        Distance: 0; Region: exon1 (5UTR)
      • AT3G19220.1 - [+] show detail - protein disulfide isomerases
        Distance: -273; Region: promoter
    Flanking Genome Sequence: 16-3006-1 - 5-prime edge 
    ATCGCTGGAA TCGTCGCAAT CGGAAGACGA TAAGATCTCT TCATCTTCTT 
    CCTCCATTTT CGTTACACCT ACGAGCCCAG AGCTCCGCTT TTGACCAATC 
    CTAAAACTCT TTTGGCGGCA AGAAATAAAA CCAAAAACAA AAACAAAGAA 
    AAACCAAATT ATTTGAAATA AAATAACCTT ATCAGAAAAG GACTAAAATA 
    TCCTTCAGAG TATATGGGAC GCTACAATTT TTCCTAACAG TTAGTTTCAT 
    GAAGATTGTA AATTTGTAAT TTTCCCCAAG TTTTTAAGTA TTTACACACA 
    AAAACAAAAA TATCCGAATT TTTTTAATTC GTCGAGGTTG ATT

AT3G19210.1

Model type
Protein coding
Short Description
homolog of RAD54
Curator Summary
Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.
Computational Description
homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole, cultured cell; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G08600.2); Has 18387 Blast hits to 15591 proteins in 2067 species: Archae - 120; Bacteria - 5826; Metazoa - 3647; Fungi - 4163; Plants - 1557; Viruses - 140; Other Eukaryotes - 2934 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19210.2

Model type
Protein coding
Short Description
homolog of RAD54
Curator Summary
Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.
Computational Description
homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1).
Link
InterPro Scan - TAIR

AT3G19220.1

Model type
Protein coding
Short Description
protein disulfide isomerases
Curator Summary
Encodes a zinc finger protein that is similar to a subgroup of DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.
Computational Description
SNOWY COTYLEDON 2 (SCO2); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR