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16-3019-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 148941 [Map]; Strand: c
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon17 (3UTR)
      • AT2G01290.1 - [+] show detail - ribose-5-phosphate isomerase 2
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 16-3019-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TACACAGGCC 
    CAGTAGTAAA AGAAGAGCAT TCAAACACAA CAAAGGCAAT GAAGAAGCAA 
    AATGCTGTTT ACAAGATTGA TTGATGATGA TGACGACGAT GTCAATGCAT 
    CCAAAACTCT GTCAAAAGAA AGTCATTCAT CCTCCTCACA GTGACATCAT 
    CCAAAACCTA ATCTCATATC ATCTAAACCA TAGAGCAAAC CATAATCCTC 
    TGTCTCCTAA TACATAAAGG CCAAAATCAA CGAGAAGAGG TGTGGTGTGT 
    GTTTCAGTGT TTGTTCTTGA TCTTAACACC AAGCTCACCT GCAATGATAA 
    CAGTAGAAGC CATATCCAGA AACATCCCAT GCTCCACTAC TCCCGGTAGC 
    CTCAGAATCG CATCACTCAC TGCTCCCAAA TCTCCCATAT CCTCTTCCAC 
    ATGCATATCC ACTATGTAAT TCCCATTGTC TGTCACAAAG GCCTTCCCTT 
    TCTCTCCCAA ACGAAGATTC GCTTCACACC CGTATCCTTC CAGCAGACTC 
    CGGAGCTTCT CCGCCGTGAA TTTCCAGCAA AAGGGCACTA TCTCCACCGG 
    AAGAGCAAGC T

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01290.1

Model type
Protein coding
Short Description
ribose-5-phosphate isomerase 2
Curator Summary
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR