1. Home
  2. Mutant Lines
  3. 16-3035-1

16-3035-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15309153 [Map]; Strand: c
      • AT4G31580.2 - [+] show detail - serine/arginine-rich 22
        Distance: 806; Region: intergenic
      • AT4G31590.1 - [+] show detail - Cellulose-synthase-like C5
        Distance: 353; Region: intergenic
    Flanking Genome Sequence: 16-3035-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAG TATACTTTTG TTTTTTCACT TAATTTGGGA 
    TTTATAGTTG CTGAAACGAA ACCATAGCTA GTTGTTACAT GAATAAGAGC 
    AAATCAGATT ATATATTCAA TCTTCCTCTT AGGCAATTAC TTTTGCTTCA 
    CCTTCATAAA AGTGAACAAT TTCACAACTA TGCTTAAGTG AAATGAACAC 
    AAGTACCAAA TGGTAGCAAC TGATACGCAT TTACAAATTC TTGACTTGCC 
    TATATAAACC GTGAAATGCA CAAAAATCTA TCCAAGGACA AGAATGTGCA 
    TACTAAACAC TATCACATAG CTACAATTAT GCTAAACCTA ATGCACAACA 
    TTCAGACCAC ACAAGAGGTG CTTCTGAGTG ATGCAGCTCA AGTTCATGCA 
    AAGAAGGTAA CATCAAAGCT GATGAAGTTT TCAAGTATTA GCGCATCTCT 
    AGGGTCGAAG ATGAAGTAGA AGCAAGCCAT GTAGGGATC

AT4G31580.2

Model type
Protein coding
Short Description
serine/arginine-rich 22
Curator Summary
Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
Computational Description
serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31590.1

Model type
Protein coding
Short Description
Cellulose-synthase-like C5
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
Cellulose-synthase-like C5 (CSLC5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 5645 Blast hits to 5642 proteins in 1596 species: Archae - 219; Bacteria - 4417; Metazoa - 64; Fungi - 93; Plants - 510; Viruses - 16; Other Eukaryotes - 326 (source: NCBI BLink).
Link
InterPro Scan - TAIR