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51-0238-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 99320 [Map]; Strand: c
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon5 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 51-0238-1 - 3-prime edge 
    TCCACAATTA CCGTATTTGG TCTTTCCTCG GCCTTGGCAT GACCACCTAC 
    ACCGCTTGGT ACCTCACCAT CTACGCTTCT CTCCAAGGTC AGGTATGTCC 
    TCATCAATAT CAAATGATTT AAATGAAGAA AAAACAATGT GACTTAAACC 
    GGTTGTAACT TACTGGTTTG TATGCGGAGG GTGTGACACA TTCCGGTCCG 
    ACCAAGCTTG TGTTGTACTT TACCGGAGCC ACCAACATCC TCTATACCTT 
    CGGTGGACAC GCTGTGACCG TGTAAGTATT TTTAATATTT CTCATGGATT 
    TTCAATTAAT TGTATA

AT5G01240.1

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR